2016 ; ARTICLE :
Aluome, C., Aubert, G., Alves Carvalho, S., Le Paslier, D., Burstin, J., Brunel, D. (2016). De novo construction of a “Gene-space” for diploid plant genome rich in repetitive sequences by an iterative Process of Extraction and Assembly of NGS reads (iPEA protocol) with limited computing resources. BMC Research Notes, 9 (1), 1-9. DOI : 10.1186/s13104-016-1903-z
http://prodinra.inra.fr/record/367991
Nesme, J., Achouak, W., Agathos, S. N., Bailey, M., Baldrian, P., Brunel, D., Frostegard, A., Heulin, T., Jansson, J. K., Jurkevitch, E., Kruus, K. L., Kowalchuk, G. A., Lagares, A., Lappin-Scott, H. M., Lemanceau, P., Le Paslier, D., Mandic-Mulec, I., Murrell, J. C., Myrold, D. D., Nalin, R., Nannipieri, P., Neufeld, J. D., O'Gara, F., Parnell, J. J., Puehler, A., Pylro, V., Ramos, J. L., Roesch, L. F. W., Schloter, M., Schleper, C., Sczyrba, A., Sessitsch, A., Sjoeling, S., Sorensen, J., Sorensen, S. J., Tebbe, C. C., Topp, E., Tsiamis, G., van Elsas, J. D., van Keulen, G., Widmer, F., Wagner, M., Zhang, T., Zhang, X., Zhao, L., Zhu, Y.-G., Vogel, M., Simonet, P. (Auteur de correspondance) (2016). Back to the Future of Soil Metagenomics. Frontiers in Microbiology, 7. DOI : 10.3389/fmicb.2016.00073
Web of science® Times Cited : 3
http://prodinra.inra.fr/record/356150
Revilla, P. (Auteur de correspondance), Manuel Rodriguez, V., Ordas, A., Rincent, R., Charcosset, A., Giauffret, C., Melchinger, A. E., Schoen, C.-C., Bauer, E., Altmann, T., Brunel, D., Moreno-Gonzalez, J., Campo, L., Ouzunova, M., Alvarez, A., Ruiz de Galarreta, J. I., Laborde, J., Ana Malvar, R. (2016). Association mapping for cold tolerance in two large maize inbred panels. BMC Plant Biology, 16, 1-10. DOI : 10.1186/s12870-016-0816-2
http://prodinra.inra.fr/record/382611
Nicolas, S., Peros, J.-P., Lacombe, T., Launay, A., Le Paslier, M.-C., Berard, A., Mangin, B., Valiere, S., MARTINS, F., Le Cunff, L., Laucou, V., Bacilieri, R., Dereeper, A., Chatelet, P., This, D., Doligez, A. (Auteur de correspondance) (2016). Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies. BMC Plant Biology, 16 (1). DOI : 10.1186/s12870-016-0754-z
Web of science® Times Cited : 2
http://prodinra.inra.fr/record/351345
Pascual, L., Albert, E., Sauvage, C., Duangjit, J., Bouchet, J.-P., Bitton, F., Desplat, N., Brunel, D., Le Paslier, M.-C., Ranc, N., Bruguier, L., Chauchard, B., Verschave, P., Causse, M. (Auteur de correspondance) (2016). Dissecting quantitative trait variation in the resequencing era: Complementarity of bi-parental, multi-parental and association panels. Plant Science, 242, 120-130. DOI : 10.1016/j.plantsci.2015.06.017
Web of science® Times Cited : 3
http://prodinra.inra.fr/record/309395
Plomion, C., Aury, J.-M., Amselem, J., Alaeitabar, T., Barbe, V., Belser, C., Berges, H., Bodenes-Brezard, C., Boudet, N., Boury, C., Canaguier, A., Couloux, A., Da Silva, C., Duplessis, S., Ehrenmann, F., Estrada-Mairey, B., Fouteau, S., Francillonne, N., Gaspin, C., Guichard, C., Klopp, C., Labadie, K., Lalanne, C., Le Clainche, I., Leplé, J.-C., Le Provost, G., Leroy, T., Lesur Kupin, I., Martin, F., Mercier, J., Michotey, C., Murat, F., Salin, F., Steinbach, D., Faivre-Rampant, P., Wincker, P., Salse, J., Quesneville, H., Kremer, A. (2016). Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies. Molecular Ecology Resources, 16 (1), 254-265. DOI : 10.1111/1755-0998.12425
Web of science® Times Cited : 14
http://prodinra.inra.fr/record/306328
Garcia, V. (Co-premier auteur), Bres, C. (Co-premier auteur), Just, D. (Co-premier auteur), Fernandez, L. (Co-premier auteur), Wong Jun Tai, V., Mauxion, J.-P., Le Paslier, M.-C., Berard, A., Brunel, D., Aoki , K., Alseekh, S., Fernie, A. R., Fraser, P. D., Rothan, C. (2016). Rapid identification of causal mutations in tomato EMS populations via mapping-by-sequencing. Nature Protocols, 11 (12), 2401-2418. DOI : 10.1038/nprot.2016.143
http://prodinra.inra.fr/record/377062
Faivre-Rampant, P. (Auteur de correspondance), Zaina, G., Jorge, V., Giacomello, S., Segura, V., Scalabrin, S., Guérin, V., De Paoli, E., Aluome, C., Viger, M., Cattonaro, F., Payne, A., Paulstephenraj, P. S., Le Paslier, M.-C., Berard, A., Allwright, M., Villar, M., Taylor, G., Bastien, C., Morgante, M. (2016). New resources for genetic studies in Populus nigra: genome-wide SNP discovery and development of a 12k Infinium array. Molecular Ecology Resources, 16 (4), 1023-1036. DOI : 10.1111/1755-0998.12513
Web of science® Times Cited : 1
http://prodinra.inra.fr/record/344224
Pinosio, S., Giacomello, S., Faivre-Rampant, P., Taylor, G., Jorge, V., Le Paslier, M.-C., Zaina, G., Bastien, C., Cattonaro, F., Marroni, F., Morgante, M. (2016). Characterization of the poplar pan-genome by genome-wide identification of structural variation. Molecular Biology and Evolution, 33 (10), 2706-2719. DOI : 10.1093/molbev/msw161
http://prodinra.inra.fr/record/367576
Allwright, M. R., Payne, A., Emiliani, G., Milner, S., Viger, M., Rouse, F., Keurentjes, J. J. B., Berard, A., Wildhagen, H., Faivre-Rampant, P., Polle, A., Morgante, M., Taylor, G. (Auteur de correspondance) (2016). Biomass traits and candidate genes for bioenergy revealed through association genetics in coppiced European Populus nigra (L.). Biotechnology for Biofuels, 9. DOI : 10.1186/s13068-016-0603-1
http://prodinra.inra.fr/record/375752
2016 ; PAPER :
[Abstract] Causse, M., Pascual, L., Sauvage, C., Albert, E., Bouchet, J.-P., Brunel, D., Le Paslier, M.-C. (2016). Deciphering the genetic control of tomato fruit composition in flavonoids in the resequencing Era. Presented at 24. International Plant and Animal Genome Conference, San Diego, USA (2016-01-09 - 2016-01-13).
http://prodinra.inra.fr/record/343722
2016 ; PROCEEDING_PAPER :
[Présentation orale] Jorge, V., Faivre-Rampant, P., Guérin, V., Le Paslier, M.-C., Berard, A., Chauveau, A., Segura, V., Bastien, C., Villar, M., Dowkiw, A. (2016). Napoleonian legacy in Populus nigra populations. In: IUFRO Genomics and Forest Tree Genetics. Book of Abstract (p. p. 23). Presented at IUFRO Genomics and Forest Tree Genetics, Arcachon, FRA (2016-05-30 - 2016-06-03).
http://prodinra.inra.fr/record/357487
[Présentation orale] Burstin, J., Tayeh, N., Klein, A., Kreplak, J., Jacquin, F., Alves Carvalho, S., Aluome, C., Carrere, S., Gouzy, J., Cruaud, C., Wincker, P., Brunel, D., Falque, M., Le Paslier, M.-C., Aubert, G. (2016). Le pois, espèce modèle ? . Presented at 1. Rencontres Francophones sur les Légumineuses (RFL1), Dijon, FRA (2016-05-31 - 2016-06-01).
http://prodinra.inra.fr/record/368347
[Poster] Francillonne, N., Bodénès, C., Ehrenmann, F., Michotey, C., Kremer, A., Brendel, O., Amselem, J., Plomion, C., Faivre-Rampant, P. (2016). Detection of WUE positional candidate genes by combining QTL maps and BAC sequencing with the annotated oak genome sequence. In: Book of abstracts (p. 112-113). Presented at Genomics and Forest Tree Genetics Conference, Arcachon, FRA (2016-05-30 - 2016-06-03).
http://prodinra.inra.fr/record/365482
[Présentation orale] Salse, J., Aury, J. M., Murat, F., Faye, S., Labadie, K., Dossat, C., d’Agata, L., Da Silva, C., Barbe, V., Wincker, P., Klopp, C., Faivre-Rampant, P., Berges, H., Amselem, J., Quesneville, H., Francillonne, N., Bodénès, C., Le Provost, G., Lalanne, C., Salin, F., Ehrenmann, F., Leroy, T., Lesur, I., Kremer, A., Plomion, C. (2016). Oak genome sequencing and evolution. In: Book of abstracts (p. 36). Presented at Genomics and Forest Tree Genetics Conference, Arcachon, FRA (2016-05-30 - 2016-06-03).
http://prodinra.inra.fr/record/365219
[Poster] Le Paslier, M.-C., Berard, A., Chauveau, A., MARQUAND, E., Boland-Auge, A., Eggen, A., Brunel, D., Faivre-Rampant, P. (2016). Performance of a multi-species-plant illumina beadchip. In: PAG XXIV - Plant and Animal Genome Conference. Presented at PAG XXIV - Plant and Animal Genome Conference, San Diego, USA (2016-01-09 - 2016-01-13).
http://prodinra.inra.fr/record/351444
[Présentation orale] Amselem, J., Aury, J. M., Francillonne, N., Alaeitabar, T., Da Silva, C., Duplessis, S., Ehrenmann, F., Faye, S., Klopp, C., Gaspin, C., Rué, O., Labadie, K., Leroy, T., Lesur, I., Faivre-Rampant, P., Leplé, J.-C., Kremer, A., Martin, F., Salse, J., Quesneville, H., Plomion, C. (2016). Annotation of the oak genome sequence and associated bioinformatic resources. In: IUFRO Genomics and Forest Tree Genetics. Abstract book (p. p. 37). Presented at IUFRO Genomics and Forest Tree Genetics, Arcachon, FRA (2016-05-30 - 2016-06-03).
http://prodinra.inra.fr/record/365223
[Poster] Pégard, M., Jorge, V., Faivre-Rampant, P., Munoz, F., Rogier, O., Segura, V., Bastien, C., Sanchez Rodriguez, L. (2016). Preliminary training of a genomic evaluation in a breeding pedigree of Populus nigra L. In: Abstract Book. IUFRO Genomics and Forest Tree Genetics (p. p. 93). Presented at IUFRO Genomics and Forest Tree Genetics, Arcachon, FRA (2016-05-30 - 2016-06-03).
http://prodinra.inra.fr/record/357497
[Présentation orale] Faivre-Rampant, P., Jorge, V., Zaina, G., Giacomello, S., Segura, V., Scalabrin, S., Guérin, V., De Paoli, E., Aluome, C., Viger, M., Cattonaro, F., Payne, A., Paulstephenraj, P. S., Le Paslier, M.-C., Berard, A., Allwright, M., Villar, M., Taylor, G., Bastien, C., Morgante, M. (2016). A new Genomic resource for Populus nigra and its deployment for genetic studies. In: IUFRO Genomics and Forest Tree Genetics. Book of Abstract (p. p. 39). Presented at IUFRO Genomics and Forest Tree Genetics, Arcachon, FRA (2016-05-30 - 2016-06-03).
http://prodinra.inra.fr/record/357490
2016 ; PROCEEDINGS :
Burstin, J., Tayeh, N., Klein, A., Bourion, V., Kreplak, J., Jacquin, F., Alves Carvalho, S., Aluome, C., Carrere, S., Gouzy, J., Cruaud, C., Duc, G., Gamas, P., Brunel, D., Falque, M., Le Paslier, M.-C., Wincker, P., Aubert, G. (2016). Génétique et génomique du pois : what else ?. Trésor des fèves et fleur des pois, le génie des légumineuses. Colloque scientifique SNHF Société Nationale d'Horticulture de France, Paris, FRA (2016-05-20). Société Nationale d'Horticulture de France.
http://prodinra.inra.fr/record/368902
