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24, chemin de Borde Rouge –Auzeville – CS52627
31326 Castanet Tolosan CEDEX - France

Dernière mise à jour : Mai 2018

Menu Logo Principal AgroParisTech université Paris-Saclay

Welcome to ECOSYS

UMR ECOSYS - Ecologie fonctionnelle et écotoxicologie des agroécosystèmes

Peer-reviewed Journals - Eco&Phy Team

Years 2013-2020


Abis L., Loubet B., Ciuraru R., Lafouge F., Houot S., Nowak V., Tripied J., Dequiedt S., Maron P.A., Sadet-Bourgeteau S., 2020. Reduced microbial diversity induces larger volatile organic compound emissions from soils. Scientific Reports (Nature), 10, 1, article no 6104, 15 p.

Bsaibes S., Gros V., Truong F., Boissard C., Baisnée D., Sarda-Esteve R., Zannoni N., Lafouge F., Ciuraru R., Buysse P., Kammer J., Gomez L.G., Loubet B., 2020. Characterization of Total OH Reactivity in a Rapeseed Field: Results from the COV3ER Experiment in April 2017. Atmosphere, 11, 3, article no 261, 25 p.

Chalhoub M.,Gabrielle B., Tournebize J., Chaumont C., Maugis P., Girardin C., Montagne D., Baveye P.C., Garnier P., 2020. Direct measurement of selected soil services in a drained agricultural field: Methodology development and case study in Saclay (France). Ecosystems Services, 42, article no 101088, 14 p.

Clifton O.E., Paulot F., Fiore A.M., Horowitz L.W., Correa G., Baublitz C.B., Fares S., Goded I., Goldstein A.H., Gruening C., Hogg A.J., Loubet B., Mammarella I., Munger J.W., Neil L., Stella P., Uddling J., Vesala T., Weng E., 2020. Influence of Dynamic Ozone Dry Deposition on Ozone Pollution. Journal of Geophysical Research-D Atmospheres, 125, 8, 21 p.

Cowan N., Levy P., Maire J., Coyle M., Leeson S.R., Famulari D., Carozzi M., Nemitz E., Skiba U., 2020. An evaluation of four years of nitrous oxide fluxes after application of ammonium nitrate and urea fertilisers measured using the eddy covariance method. Agricultural and Forest Meteorology, 280, article no 107812, 12 p.

Domingues J.P., Gameiro A.H., Bonaudo T., Gabrielle B., Tichit M., 2020. Past intensification trajectories of livestock led to mixed social and environmental services. Animal, 14, 3, 598-608.

Kammer J., Decuq C., Baisnée D., Ciuraru R., Lafouge F., Buysse P., Bsaibes S., Henderson B., Cristescu S.M., Benabdallah R., Chandra V., Durand B., Fanucci O., Petit J.-E., Truong F., Bonnaire N., Sarda-Estève R., Gros V., Loubet B., 2020. Characterization of particulate and gaseous pollutants from a French dairy and sheep farm. Science of The Total Environment, article no 135598, Published online.

Launay M., Zurfluh O., Huard F., Buis S., Bourgeois G., Caubel J., Huber L., Bancal M.-O., 2020. Robustness of crop disease response to climate change signal under modeling uncertainties. Agricultural Systems, 178, article no 102733, 14 p.

Le Gal A., Robert C., Accatino F., Claessen D., Lecomte J., 2020. Modelling the interactions between landscape structure and spatio-temporal dynamics of pest natural enemies: Implications for conservation biological control. Ecological Modelling, 420, article no 108912, 12 p.

Martin G., ..., Cellier P.,et al, 2020. Role of ley pastures in tomorrow’s cropping systems. A review. Agronomy for Sustainable Development, in press.

Njakou Djomo S., Knudsen M.T., Martinsen L., Andersen M.S., Ambye-Jensen M., Møller H.B., Hermansen J.E., 2020. Green proteins: An energy-efficient solution for increased self-sufficiency in protein in Europe. Biofpr Biofuels, Bioproducts and Biorefining, 15 p. Published online.

Pardon L., Bockstaller C., Marichal R., Sionita R., Nelson P.N., Gabrielle B., Laclau J.-P., Pujianto P., Jean-Pierre C., Bessou C., 2020. IN-Palm: An agri-environmental indicator to assess nitrogen losses in oil palm plantations. Agronomy Journal, Published online.

Précigout P.A., Claessen D., Makowski D., Robert C., 2020. Does the latent period of leaf-fungal pathogens reflect their trophic type ? A meta-analysis of biotrophs, hemibiotrophs, and necrotrophs. Phytopathology, in press. Published online.

Precigout P.A.,Robert C., Claessen D., 2020. Adaptation of Biotrophic Leaf Pathogens to Fertilization-Mediated Changes in Plant Traits: A Comparison of the Optimization Principle to Invasion Fitness. Phytopathology, in press.

Sandor R., ..., Laville P.,et al, 2020. Ensemble modelling of carbon fluxes in grasslands and croplands. Field Crops Research, in press.

Savi F., Nemitz E., Coyle M., Aitkenhead M., Frumau K., Gerosa G., Finco A., Gruening C., Goded I., Loubet B., Stella P., Ruuskanen T., Weidinger T., Horvath L., Zenone T., Fares S., 2020. Neural Network Analysis to Evaluate Ozone Damage to Vegetation Under Different Climatic Conditions. Frontiers in Forests and Global Change, 3, article no 42, 14 p.

Song R., Muller J.-P., Kharbouche S., Yin F., Woodgate W., Kitchen M., Roland M., Arriga N., Meyer W., Koerber G., Bonal D., Burban B., Knohl A., Siebicke L., Buysse P., Loubet B., Leonardo M., Lerebourg C., Gobron N., 2020. Validation of space-based albedo products from upscaled tower-based measurements over heterogeneous and homogeneous landscapes. Remote Sensing, 12, 5, article no 833, 22 p.

Vidal T.,Andrieu B., 2020. Contrasting phenotypes emerging from stable rules: A model based on self-regulated control loops captures the dynamics of shoot extension in contrasting maize phenotypes. Annals of Botany, in press. Published online.


Abichou, M., De Solan, B., Andrieu, B., 2019. Architectural response of wheat cultivars to row spacing reveals altered perception of plant density. Frontiers in Plant Science, 10, article 999, 14 p.

Albasha R., Fournier C., Pradal C., Chelle M., Prieto J.A., Louarn G., Simonneau T., Lebon E., 2019. HydroShoot: a functional-structural plant model for simulating hydraulic structure, gas and energy exchange dynamics of complex plant canopies under water deficit - application to grapevine (Vitis vinifera L.). In Silico Plants, 1, no 1, article no diz007.

Azouz, N., Drouet, J.-L., Beekmann, M., Siour, Wichink Kruit, R., Cellier, P., 2019. Comparison of spatial patterns of ammonia concentration and dry deposition flux between a regional Eulerian chemistry-transport model and a local Gaussian plume model. Air Quality, Atmosphere & Health, 12, 6, 719-729.

Barillot, R., Chambon, C., Fournier, C., Combes, D., Pradal, C., Andrieu, B., 2019. Investigation of complex canopies with a functional–structural plant model as exemplified by leaf inclination effect on the functioning of pure and mixed stands of wheat during grain filling. Annals of Botany, 123, 727-742.

Boixel, A.-L., Delestre, G., Legeay, J., Chelle, M., Suffert, F., 2019. Phenotyping Thermal Responses of Yeasts and Yeast-like Microorganisms at the Individual and Population Levels: Proof-of-Concept, Development and Application of an Experimental Framework to a Plant Pathogen. Microbial Ecology, 78 (1), 42-56.

Brun J., Salembier C., Loubet B., Jullien A., 2019. Designing collaborative research: the exploration of common purposes to foster the generation of cross-disciplinary projects. Proceedings of the Design Society: International Conference on Engineering Design (ICED19, Delft, NLD, 2019), 1, 1, 2219-2228.

Casal L., Durand P., Akkal-Corfini N., Benhamou C., Laurent F., Salmon-Monviola J., Ferrant S., Probst A., Probst J.L., Vertès F., 2019. Reduction of stream nitrate concentrations by land management in contrasted landscapes. Nutrient Cycling in Agroecosystems, 114, 1, 1-17.

Chiodini M.E., Perego A., Carozzi M., Acutis M., 2019. The Nitrification Inhibitor Vizura® Reduces N2O Emissions When Added to Digestate before Injection under Irrigated Maize in the Po Valley (Northern Italy). Agronomy, 9, 8. Article no 431, 17 p.

Cowan N., Levy P., Moring A., Simmons I., Bache C., Stephens A., Marinheiro J., Brichet J., Song L., Pickard A., McNeill C., McDonald R., Maire J., Loubet B., Voylokov P., Sutton M., Skiba U., 2019. Nitrogen use efficiency and N2O and NH3 losses attributed to three fertiliser types applied to an intensively managed silage crop. Biogeosciences, 16, 23, 4731-4745.

Delon, C., Galy-Lacaux, Serça, Personne, E., Mougin, E., Adon, M., Le Dantec, V., Loubet, B., Fensholt, R., Tagesson, T., 2019. Modelling land–atmosphere daily exchanges of NO, NH3, and CO2 in a semi-arid grazed ecosystem in Senegal. Biogeosciences, 16 (9), 2049-2077.

Domingues J.P., Gameiro A.H., Bonaudo T., Tichit M., Gabrielle B., 2019. Exploring trade-offs among indicators of performance and environmental impact in livestock areas. Regional Environmental Change, 19, 7, 2089-2099.

Gaudio N., Escobar-Gutiérrez A.J., Casadebaig P., Evers J.B., Gérard F., Louarn G., Colbach N., Munz S., Launay M., Marrou H., Barillot R., Hinsinger P., Bergez J.-E., Combes D., Durand J.-L., Frak E., Pagès L., Pradal C., Saint-Jean S., Van Der Werf W., Justes E., 2019. Current knowledge and future research opportunities for modeling annual crop mixtures. A review. Agronomy for Sustainable Development, 39, article no 20, 20 p.

Girard N., Aubin-Houzelstein G., Broussolle V., Chelle M., Lamothe L., Garcia F., Lutton E., Santé  A., 2019. Former ensemble doctorant et encadrant(s) à l’INRA, un institut de recherche pluridisciplinaire et finalisé (Training doctoral students and supervisors together at Inra, a multidisciplinary research institute). Natures Sciences Sociétés, 27, 3, Published online.

Gonzaga Gomez L., Loubet B., Lafouge F., Ciuraru R., Buysse P., Durand B., Gueudet J.-C., Fanucci O., Fortineau A., Zurfluh O., Decuq C., Kammer J., Duprix P., Bsaibes S., Truong F., Gros V., Boissard C., 2019. Comparative study of biogenic volatile organic compounds fluxes by wheat, maize and rapeseed with dynamic chambers over a short period in northern France. Atmospheric Environment, 214, article no 116855, 16 p.

Hafner, S. D., Pacholski, A., Bittman, S., Carozzi, M., Chantigny, M., Genermont, S., Häni, C., Hansen, M. N., Huijsmans, J., Kupper, Misselbrook, T., Neftel, A., Nyord, Sommer, 2019. A flexible semi-empirical model for estimating ammonia volatilization from field-applied slurry. Atmospheric Environment, 199, 474-484.

Haro K., Ouarma I., Nana B., Bere A., Tubreoumya G.C., Kam S.Z., Laville P., Loubet B., Koulidiati J., 2019. Assessment of CH4 and CO2 surface emissions from Polesgo's landfill (Ouagadougou, Burkina Faso) based on static chamber method. Advances in Climate Change Research, 10, 3,, 181-191.

LeCarpentier, C., Barillot, R., Blanc, E., Abichou, M., Goldringer, I., Barbillon, P., Enjalbert, J., Andrieu, B., 2019. WALTer: a three-dimensional wheat model to study competition for light through the prediction of tillering dynamics. Annals of Botany, 123, 6, 961-975.

Lichiheb, N., Myles, Personne, E., Heuer, M., Buban, M., Nelson, A. J., Koloutsou-Vakakis, S., Rood, M. J., Joo, E., Miller, Bernacchi, C., 2019. Implementation of the effect of urease inhibitor on ammonia emissions following urea-based fertilizer application at a Zea mays field in central Illinois: A study with SURFATM-NH3 model. Agricultural and Forest Meteorology, 269-270, 78-87.,

Liu S., Martre P., Buis S., Abichou M., Andrieu B., Baret F., 2019. Estimation of Plant and Canopy Architectural Traits Using the Digital Plant Phenotyping Platform. Plant Physiology, 181, 3, 881-890.

Massad R.S., Lathière J., Strada S., Perrin M., Personne E., Stéfanon M., Stella P., Szopa S., de Noblet-Ducoudré N., 2019. Reviews and syntheses: influences of landscape structure and land uses on local to regional climate and air quality. Biogeosciences, 16, 11, 2369-2408.

Raffn J., Hauschild M.Z., Dalgaard T., Djomo S.N., Averbuch B., Hermansen J.E., 2019. Obligatory inclusion of uncertainty avoids systematic underestimation of Danish pork water use and incentivizes provision of specific inventory data. Journal of Cleaner Production, 233, 1355-1365.

Ramanantenasoa Radomahaleo, M. M. J., Genermont, S., Gilliot, J.-M., Bedos, C., Makowski, D., 2019. Meta-modeling methods for estimating ammonia volatilization from nitrogen fertilizer and manure applications. Journal of Environmental Management, 236, 195-205.,

Savall J.F., Franqueville D., Barbillon P., Benhamou C., Durand P., Taupin M.L., Monod H., Drouet J.L., 2019. Sensitivity analysis of spatio-temporal models describing nitrogen transfers, transformations and losses at the landscape scale. Environmental Modelling and Software, 111, 356-367.

Stella, P., Loubet, B., de Berranger, C., Charrier, X., Ceschia, E., Gerosa, G., Finco, A., Lamaud, E., Serça, D., George, C., Ciuraru, R., 2019. Soil ozone deposition: Dependence of soil resistance to soil texture. Atmospheric Environment, 199, 202-209.

Tuzet A.Rahantaniaina M.S., Noctor G., 2019. Analyzing the Function of Catalase and the Ascorbate–Glutathione Pathway in H2O2 Processing: Insights from an Experimentally Constrained Kinetic Model. Antioxidants and Redox Signaling, 30, 9.

Vaudour E., Gomez C., Loiseau T., Baghdadi N., Loubet B., Arrouays D., Ali L., Lagacherie P., 2019. The Impact of Acquisition Date on the Prediction Performance of Topsoil Organic Carbon from Sentinel-2 for Croplands. Remote Sensing, 11, 18, article no 2143, 17 p. 

Vigan A., Hassouna M., Guingand N., Brame C., Edouard N., Eglin T., Espagnol S., Eugène M., Génermont S., Lagadec S., Lorinquer E., Loyon L., Ponchant P., Robin P., 2019. Development of a database to collect emission values for livestock systems. Journal of Environment Quality, 48, 6, 1899-1906.

Wohlfahrt, J., Frechaud, F., Gabrielle, B., Godard, C., Kurek, B., Loyce, C., Therond, O., 2019. Characteristics of bioeconomy systems and sustainability issues at the territorial scale. A review. Journal of Cleaner Production, 232, 898-909.


Abichou M., Fournier C., Dornbusch T., Chambon C., de Solan B., Gouache D., Andrieu B., 2018. Parameterising wheat leaf and tiller dynamics for faithful reconstruction of wheat plants by structural plant models. Field Crops Research, 218, 213-230.

Abis, L., Loubet, B., Ciuraru, R., Lafouge, F., Dequiedt, S., Houot, S., Maron, P.-A., Bourgeteau-Sadet, S., 2018. Profiles of volatile organic compound emissions from soils amended with organic waste products. Science of the Total Environment, 636, 1333-1343.

Baey C., Mathieu A.Jullien A., Trevezas S., Cournède P.-H., 2018. Mixed-effects estimation in dynamic models of plant growth for the assessment of inter-individual variability. Journal of AgriculturalBiological and Environmental Statistics, 23 (2), 208-232.

Boixel, A.-L., Delestre, G., Legeay, J., Chelle, M., Suffert, F. Phenotyping Thermal Responses of Yeasts and Yeast-like Microorganisms at the Individual and Population Levels: Proof-of-Concept, Development and Application of an Experimental Framework to a Plant Pathogen. Microbial Ecology,

Borg J., Kiær L.P., Lecarpentier C., Goldringer I., Gauffreteau A., Saint-Jean S., Barot S., Enjalbert J., 2018. Unfolding the potential of wheat cultivar mixtures: A meta-analysis perspective and identification of knowledge gaps. Field Crops Research, 221, 298-313.

Brault V., Lévy-Leduc C., Mathieu A., Jullien A., 2018. Change-point estimation in the multivariate model taking into account the dependence: Application to the vegetative development of oilseed rape. Journal of Agricultural, Biological, and Environmental Statistics, à paraître:

Brunelle T., Dumas P., Ben Aoun W., Gabrielle B., 2018. Unravelling land-use change mechanisms at global and regional scales. BioPhysical Economics and Resource Quality, 3, 3, article 13,

Collin, F.,  Bancal, P., Spink, J., Kock Appelgren, P., Smith, J., Paveley, ND., Bancal, M-O., Foulkes, J., 2018. Wheat lines exhibiting variation in tolerance of Septoria tritici blotch differentiated by grain source limitation. Field Crops Research, 217, 1-10

Delon C., Galy-Lacaux C., Serça D., Personne E., Mougin E., Adon M., Le Dantec V., Loubet B., Fensholt R., Tagesson T., 2018. Modelling land atmosphere daily exchanges of NO, NH3, and CO2 in a semi-arid grazed ecosystem in Senegal. Biogeosciences Discussions, 1-46.

de Vallavieille-Pope, C., Bahri, B., Leconte, M., Zurfluh, O., Huard, F., Belaid, Y., Maghrebi, E., Huber, L., Launay, M., Bancal, M.-O., 2018. Thermal generalist behavior of invasive Puccinia striiformis f. sp. Tritici strains under current and future climate conditions. Plant Pathology, 67, 1307-1320.

Domingues J.P., Ryschawy J., Bonaudo T., Gabrielle B., Tichit M., 2018. Unravelling the physical, technological and economic factors driving the intensification trajectories of livestock systems. Animal, 12, 8, 1652-1661.

Ehrhardt F., Soussana J.F., Bellocchi G., Grace P., McAuliffe R., Recous S., Sandor R., Smith P., Snow V., Migliorati M.D.A., Basso B., Bhatia A., Brilli L., Doltra J., Dorich C.D., Doro L., Fitton N., Giacomini S.J., Grant B., Harrison M.T., Jones S.K., Kirschbaum M.U.F., Klumpp K., Laville P., Leonard J., Liebig M., Lieffering M., Martin R., Massad R.S., Meier E., Merbold L., Moore A.D., Myrgiotis V., Newton P., Pattey E., Rolinski S., Sharp J., Smith W.N., Wu L., Zhang Q., 2018. Assessing uncertainties in crop and pasture ensemble model simulations of productivity and N2 O emissions. Global Change Biology, 24(2), e603-e616.

El Akkari M., Réchauchère O., Briand A., Gabrielle B., Makowski, D., 2018. A meta-analysis of the greenhouse gas abatement of bioenergy factoring in land use changes. Scientific Reports, 8, article no 8563.

El Akkari M., Sandoval M., Le Perchec S., Réchauchère O., 2018. Textual analysis of published research articles on the environmental impacts of land-use change. Sustainable Agriculture Reviews, 18 p., à paraître.

Finco, A., Coyle, M., Nemitz, Marzuoli, Chiesa, Loubet, B., Fares, S., Diaz-Pines, E., Gasche, R., Gerosa, 2018. Characterization of ozone deposition to a mixed oak–hornbeam forest – flux measurements at five levels above and inside the canopy and their interactions with nitric oxide. Atmospheric Chemistry and Physics, 18 (24), 17945-17961.

Fortineau, A., Bancal, P., 2018. An innovative light chamber for measuring photosynthesis by three-dimensional plant organs. Plant Methods, 14 (1). ,

Franqueville, D., Benhamou, C., Pasquier, C., Hénault, C., Drouet, J.-L., 2018. Modelling reactive nitrogen fluxes and mitigation scenarios on a landscape in Central France. Agriculture, Ecosystems and Environment, 264, 99-110.

Gabrielle B., 2018. Review of the impacts on air quality and human health on of land-use changes induced by non-food biomass production. Sustainable Agriculture Reviews, 14 p., à paraître.

Gabrielle B., Barbottin A., Wohlfahrt J., 2018. The environmental impacts of non-food biomass production through land-use changes: scope, foci and methodology of current research. Sustainable Agriculture Reviews, 44 p., à paraître.

Garin G., Pradal C., Fournier C., Claessen D., Houles V., Robert C., 2018. Modelling interaction dynamics between two foliar pathogens in wheat: a multi-scale approach. Annals of Botany, 121(5), 18, 927–940.

Genermont, S., Ramanantenasoa Radomahaleo, M. M. J., Dufosse, K., Maury, O., Mignolet, C., Gilliot, J.-M., 2018. Data on spatio-temporal representation of mineral N fertilization and manure N application as well as ammonia volatilization in French regions for the crop year 2005/06. Data in Brief, 21, 1119-1124.

Hafner S.D., Pacholski A., Bittman S., Burchill W., Bussink W., Chantigny M., Carozzi M., Génermont S., Häni C., Hansen M.N., Huijsmans J., Hunt D., Kupper T., Lanigan G., Loubet B., Misselbrook T., Meisinger J.J., Neftel A., Nyord T., Pedersen S.V., Sintermann J., Thompson R.B., Vermeulen B., Vestergaard A.V., Voylokov P., Williams J.R., Sommer S.G., 2018. The ALFAM2 database on ammonia emission from field-applied manure: Description and illustrative analysis. Agricultural and Forest Meteorology, 258, 66-79.

Jiang J.Y., Comar A., Burger P., Bancal P., Weiss M., Baret F., 2018. Estimation of leaf traits from reflectance measurements: comparison between methods based on vegetation indices and several versions of the PROSPECT model. Plant Methods, 14, article no 23, 16 p.

Lammoglia, S.-K., Brun, F., Quemar, Moeys, J., Barriuso, E., Gabrielle, B., Mamy, L., 2018. Modelling pesticides leaching in cropping systems: Effect of uncertainties in climate, agricultural practices, soil and pesticide properties. Environmental Modelling and Software, 109, 342-352. 

Lavrsen Kure, J., Krabben, Vilms Pedersen, Carozzi, M., Sommer, S., 2018. An Assessment of Low-Cost Techniques to Measure Ammonia Emission from Multi-Plots: A Case Study with Urea Fertilization. Agronomy, 8 (11), 245.

Le Morvan-Quéméner, A., Kammer, J., Lamaud, E., Loubet, B., Personne, E., Stella, P., 2018. Impact of parameterization choices on the restitution of ozone deposition over vegetation. Atmospheric Environment, 178, 49-65.

Loubet B., Carozzi M., Voylokov P., Cohan J.-P., Trochard R., Génermont S., 2018. Evaluation of a new inference method for estimating ammonia volatilisation from multiple agronomic plots. Biogeosciences, 15, 11, 3439-3460.

Mathieu, A., Vidal, T., Jullien, A., Wu, Q., Chambon, C., Bayol, B., Cournede, P.-H., 2018. A new methodology based on sensitivity analysis to simplify the recalibration of functional–structural plant models in new conditions. Annals of Botany, 122, 3, 397-408.

Ramanantenasoa Radomahaleo, M. M. J., Gilliot, J.-M., Mignolet, C., Bedos, C., Mathias, E., Eglin, T., Makowski, D., Genermont, S., 2018. A new framework to estimate spatio-temporal ammonia emissions due to nitrogen fertilization in France. Science of the Total Environment, 645, 205-219.

Réchauchère O., Bispo A., Gabrielle B., Makowski D., 2018. Environmental impact of land-use change in agricultural systems: a critical review.Sustainable Agriculture Reviews, 5 p., à paraître

Réchauchère, O., El Akkari M., Le Perchec S., Makowski D., Gabrielle B., Bispo A., 2018. An innovative methodological framework for analyzing existing scientific research on land-use change and associated environmental impacts. Sustainable Agriculture Reviews, 12 p., à paraître.

Robert C., Garin G., Abichou M., Houles V., Pradal C., Fournier C., 2018. Plant architecture and foliar senescence impact the race between wheat growth and Zymoseptoria tritici epidemics. Annals of Botany, 21(5), 975–989.

Robin M.H., Bancal M.O., Cellier V., Delos M., Felix I., Launay M., Magnard A., Olivier A., Robert C., Rolland B., Sache I., Aubertot J.N., 2018. IPSIM-Web, an online resource for promoting qualitative aggregative hierarchical network models to predict plant disease risk: application to brown rust on wheat. Plant Disease, 102(3), 488-499.

Verger, Y., Petit, C., Barles, S., Billen, G., Garnier, J., Esculier, Maugis, P., 2018. A N, P, C, and water flows metabolism study in a peri-urban territory in France: The case-study of the Saclay plateau. Resources, Conservation and Recycling, 137, 200-213.

Vidal, T., Gigot, C., Pope de Vallavieille, C., Huber, L., Saint-Jean, S., 2018. Contrasting plant height can improve the control of rain-borne diseases in wheat cultivar mixture: modelling splash dispersal in 3-D canopies. Annals of Botany, 121(7), 1299-1308.

Volpi I., Laville P., Bonari E., Nassi o Di Nasso N., Bosco S., 2018. Nitrous oxide mitigation potential of reduced tillage and N input in durum wheat in the Mediterranean. Nutrient Cycling in Agroecosystems, 111, 2-3, 189-201.

Xu, W., Shang, B., Xu, Y., Yuan, X., Dore, A. J., Zhao, Y., Massad, R.-S., Feng, Z., 2018. Effects of elevated ozone concentration and nitrogen addition on ammonia stomatal compensation point in a poplar clone. Environmental Pollution, 238, 760-770.


Alpert P.A., Ciuraru R., Rossignol S., Passananti M., Tinel L., Perrier S., Dupart Y., Steimer S.S., Ammann M., Donaldson D.J., George C., 2017. Fatty acid surfactant photochemistry results in new particle formation. Scientific Reports, 7, 1, article no 12693.

Bedos C., Alletto L., Durand B., Fanucci O., Br ut A., Bourdat-Deschamps M., Giuliano S., Loubet B., Ceschia E., Benoit P., 2017. Observed volatilization fluxes of S-metolachlor and benoxacor applied on soil with and without crop residues. Environmental Science and Pollution Research, 4, 3985–3996.

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Fiorelli J.L., Drouet J.L., Duretz S., Gabrielle B., Graux A.I., Blanfort V., Capitaine M., Cellier P., Soussana J.F., 2014. Evaluation of greenhouse gas emissions and design of mitigation options: a whole farm approach based on farm management data and mechanistic models. International Journal of Sustainable Development - Special Issue on: "Development Towards High GHG Emission Reduction For Sustainable Agriculture", 17, 1, 22-34. doi:10.1504/IJSD.2014.058432

Gabrielle B., Bamière L., Caldes N., De Cara S., Decocq G., Ferchaud F., Loyce C., Pelzer E., Perez Y., Wohlfahrt J., Richard G., 2014. Paving the way for sustainable bioenergy in Europe: Technological options and research avenues for large-scale biomass feedstock supply. Renewable and Sustainable Energy Reviews, 33, 11-25. doi:10.1016/j.rser.2014.01.050

Gabrielle B., Gagnaire N., Massad R.S., Dufossé K., Bessou C., 2014. Environmental assessment of biofuel pathways in Ile de France based on ecosystem modeling. Bioresource Technology, 152, 511–518. doi:10.1016/j.biortech.2013.10.104

Gal F., Michel K., Pokryszka Z., Lafortune S., Garcia B., Rouchon V., de Donato P., Pironon J., Barres O., Taquet N., Radilla G., Prinet C., Hy-Billiot J., Lescanne M., Cellier P., Lucas H., Gibert F., 2014. Study of the environmental variability of gaseous emanations over a CO2 injection pilot—Application to the French Pyrenean foreland. International Journal of Greenhouse Gas Control, 21, 177-190. doi:10.1016/j.ijggc.2013.12.015

Garcia L., Bedos C., Génermont S., Benoit P., Barriuso E., Cellier P., 2014. Modeling Pesticide Volatilization: Testing the Additional Effect of Gaseous Adsorption on Soil Solid Surfaces. Environmental Science and Technology, 48, 9, 4991-4998. doi:10.1021/es5000879

Garin G., Fournier C., Andrieu B., Houles V., Robert C., Pradal C., 2014. A modelling framework to simulate foliar fungal epidemics using functional-structural plant models. Annals of Botany, 114, 4, 795-812 (Sp Issue On Functional–Structural Plant Modelling). doi:10.1093/aob/mcu101

Gigot C., de Vallavieille-Pope C., Huber L., Saint-Jean S., 2014. Using virtual 3-D plant architecture to assess fungal pathogen splash dispersal in heterogeneous canopies: a case study with cultivar mixtures and a non-specialized disease causal agent. Annals of Botany, 114, 4, 863-876 (Sp Issue On Functional–Structural Plant Modelling). doi:10.1093/aob/mcu098

Gu J., Loustau D., Hénault C., Li C., Rochette P., Cellier P., Nicoullaud B., Grossel A., G. R., 2014. Modeling nitrous oxide emissions from tile-drained winter wheat fields in Central France. Nutrient Cycling in Agroecosystems, 98, 1, 27-40.

Hamaoui-Laguel L., Meleux F., Beekmann M., Bessagnet B., Létinois L., Génermont S., Cellier P., 2014. Improving ammonia emissions in air quality modelling for France. Atmospheric Environment, 92, 584–595. doi:10.1016/j.atmosenv.2012.08.002

Kalogridis C., Gros V., Sarda-Esteve R., Langford B., Loubet B., Bonsang B., Bonnaire N., Nemitz E., Genard A.C., Boissard C., Fernandez C., Ormeño E., Baisnée D., Reiter I., Lathière J., 2014. Concentrations and fluxes of isoprene and oxygenated VOCs at a French Mediterranean oak forest. Atmospheric Chemistry and Physics, 14, 18, 10085-10102.

Katerji N., Rana G., 2014. FAO-56 methodology for determining water requirement of irrigated crops: critical examination of the concepts, alternative proposals and validation in Mediterranean region. Theoretical and Applied Climatology, 116, 3-4, 515-536. doi:10.1007/s00704-013-0972-3

Launay M., Caubel J., Bourgeois G., Huard F., Garcia de Cortazar-Atauri I., Bancal M.O., Brisson N., 2014. Climatic indicators for crop infection risk: Application to climate change impacts on five major foliar fungal diseases in Northern France. Agriculture, Ecosystems and Environment, 197, 147-158. doi:10.1016/j.agee.2014.07.020

Laville P., Michelin J., Houot S., Gueudet J.C., Rampon J.N., Labat C., Vaudour E., 2014. Soil N2O emissions from recovered organic waste application in Versailles Plain (France): A laboratory approach. Waste and Biomass Valorization, 5, 3, 515-527. doi:10.1007/s12649-013-9249-4

Lezhneva L., Kiba T., Feria-Bourrellier A.B., Lafouge F., Boutet-Mercey S., Zoufan P., Sakakibara H., Daniel-Vedele F., Krapp A., 2014. TheArabidopsis nitrate transporter NRT2.5 plays a role in nitrate acquisition and remobilization in nitrogen-starved plants. Plant Journal, 80, 2, 230-241.

Lichiheb N., Personne E., Bedos C., Barriuso E., 2014. Adaptation of a resistive model to pesticide volatilization from plants at the field scale: Comparison with a dataset. Atmospheric Environment, 83, 260-268. doi:10.1016/j.atmosenv.2013.11.004

Marín-Benito J.M., Pot V., Alletto L., Mamy L., Bedos C., Barriuso E., Benoit P., 2014. Comparison of three pesticide fate models with respect to the leaching of two herbicides under field conditions in an irrigated maize cropping system. Science of the Total Environment, 499, 533–545. doi:10.1016/j.scitotenv.2014.06.143

Perrin A., Basset-Mens C., Gabrielle B., 2014. Life cycle assessment of horticultural products : a review focusing on cropping systems diversity and the estimation of field emissions International Journal of Life Cycle Assessment, 19, 6, 1247-1263. doi:10.1007/s11367-014-0724-3

Peyraud J.L., Cellier P., Aarts F., Béline F., Bockstaller C., Bourblanca M., Delaby L., Dourmada J.Y., Dupraz P., Durand P., Faverdin P., Fiorelli J.L., Gaigné C., Kuikman P.J., Langlais A., Goffe P.L., Lescoat P., Morvan T., Nicourt C., Parnaudeau V., Rochette P., Vertès F., Veysset P., Réchauchère O., Donnars C., 2014. Nitrogen flows and livestock farming: lessons and perspectives. Advances in Animal Biosciences, 5 (supplement s1), 68-71.

Peyraud J.L., Cellier P., Dupraz P., Aarts F., 2014. Options for the better use of less nitrogen on livestock farms. Advances in Animal Biosciences, 5 ( Supplement s1), 59-67.

Senapati N., Chabbi A., Gastal F., Smith P., Mascher N., Loubet B., Cellier P., Naisse C., 2014. Net carbon storage measured in a mowed and grazed temperate sown grassland shows potential for carbon sequestration under grazed system. Carbon Management, 5, 2, 131-144. doi:10.1080/17583004.2014.912863

Valade A., Vuichard N., Ciais P., Ruget F., Viovy N., Gabrielle B., Huth N., Martiné J.F., 2014. ORCHIDEE-STICS, a process based model of sugarcane biomass production: calibration of model parameters governing phenology. Global Change Biology Bioenergy, 6, 5, 606-620. doi:10.1111/gcbb.12074

Vidal T., Gigot C., Belhaj Fraj M., Leconte M., Huber L., Saint-Jean S., De Vallavieille-Pope C., 2014. Associer des variétés pour maîtriser les maladies et stabiliser la production. Agronomie Environnement et Sociétés, 4, 2, 103-111.

Vilain G., Garnier J., Decuq C., Lugnot M., 2014. Nitrous oxide production from soil experiments: denitrification prevails over nitrification. Nutrient Cycling in Agroecosystems, 98, 2, 169-186. doi:10.1007/s10705-014-9604-2

Wang X.J., Mathieu A., Cournède P.H., de Reffye P., Zhang B.G., 2014. Application of a probabilistic model for analysing the abortion of seeds and pods in winter oilseed rape (Brassica napus). Annals of Applied Biology, 165, 3, 414-428. doi:10.1111/aab.12152

Zhu J., Andrieu B., Vos J., van der Werf W., Fournier C., Evers J.B., 2014. Towards modelling the flexible timing of shoot development: simulation of maize organogenesis based on coordination within and between phytomers. Annals of Botany, 114, 4, 753-762 (Sp Issue On Functional–Structural Plant Modelling). doi:10.1093/aob/mcu051


Andrivon D., Giorgetti C., Baranger A., Calonnec A., Cartolaro P., Faivre R., Guyader S., Lauri P.E., Lescourret F., Parisi L., Ney B., Tivoli B., Sache I., 2013. Defining and designing plant architectural ideotypes to control epidemics ? European Journal of Plant Pathology, 135, 3, 611-617 (Special issue Architecture and Epidemiology) doi:10.1007/s10658-012-0126-y

Barella-Ortiz A., Polcher J., Tuzet A., Laval K., 2013. Potential evaporation estimation through an unstressed surface-energy balance and its sensitivity to climate change. Hydrology and Earth System Sciences, 17, 11, 4625-4639.

Baux A., Colbach N., Allirand J.M., Jullien A., Ney B., Pellet D., 2013. Insights into temperature effects on the fatty acid composition of oilseed rape varieties. European Journal of Agronomy, 49, 12-19. doi:10.1016/j.eja.2013.03.001

Bedos C., Loubet B., Barriuso E., 2013. Gaseous deposition contributes to the contamination of surface waters by pesticides close to treated fields. A process-based model study. Environmental Science and Technology, 47, 24, 14250–14257. doi:10.1021/es402592n

Ben Aïssa I., Bouarfa S., Vincent B., Chaumont C., Perrier A., 2013. Drainage performance assessment in a modernized oasis system. Irrigation and Drainage, 62, 2, 221-228. doi:10.1002/ird.1710

Ben Aoun W., Gabrielle B., Gagnepain B., 2013. The importance of land use change in the environmental balance of biofuels. OCL Oléagineux Corps Gras Lipides, 20, 5, article no D505, 12 p. open accessdoi:10.1051/ocl/2013027

Ben Slimane R., Bancal P., Bancal M.O., 2013. Down-regulation by stems and sheaths of grain filling with mobilized nitrogen in wheat. Field Crops Research, 140, 59-68. doi:10.1016/j.fcr.2012.10.006

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Bessou C., Lehuger S., Gabrielle B., Mary B., 2013. Using a crop model to account for the effects of local factors on the LCA of sugar beet ethanol in Picardy region, France. International Journal of Life Cycle Assessment, 18, 1, 24-36. doi:10.1007/s11367-012-0457-0

Boegh E., Houborg R., Bienkowski J., Braban C.F., Dalgaard T., van Dijk N., Dragosits U., Holmes E., Magliulo V., Schelde K., Di Tommasi P., Vitale L., Theobald M.R., Cellier P., Sutton M.A., 2013. Remote sensing of LAI, chlorophyll and leaf nitrogen pools of crop- and grasslands in five European landscapes. Biogeosciences, 10, 10, 6279-6307. open accessdoi:10.5194/bg-10-6279-2013

Calonnec A., Burie J.B., Langlais M., Guyader S., Saint-Jean S., Sache I., Tivoli B., 2013. Impacts of plant growth and architecture on pathogen processes and their consequences for epidemic behaviour. European Journal of Plant Pathology, 135, 4, 479-497 (Sp. issue Architecture and Epidemiology) doi:10.1007/s10658-012-0111-5

Carozzi M., Loubet B., Acutis M., Rana G., Ferrara R.M., 2013. Inverse dispersion modelling highlights the efficiency of slurry injection to reduce ammonia losses by agriculture in the Po Valley (Italy). Agricultural and Forest Meteorology, 171-172, 306-318. doi:10.1016/j.agrformet.2012.12.012

Cellier P., Rochette P., Hénault C., Génermont S., Laville P., Loubet B., 2013. Les émissions gazeuses dans le cycle de l’azote à différentes échelles du territoire : une revue. Cahiers Agricultures, 22, 4, 258-271. open accessdoi:10.1684/agr.2013.0641

Costes E., Lauri P.E., Simon S., Andrieu B., 2013. Plant architecture, its diversity and manipulation in agronomic conditions, in relation with pest and pathogen attacks. European Journal of Plant Pathology, 135, 3, 455-470 (Special issue Architecture and Epidemiology) doi:10.1007/s10658-012-0158-3

Demotes-Mainard S., Bertheloot B., Boumaza R., Huché-Thélier L., Guéritaine G., Guérin V., Andrieu B., 2013. Rose bush leaf and internode expansion dynamics: analysis and development of a model capturing interplant variability. Frontiers in Plant Science, 4, article no 418, 12 p. - Open Access. . doi:10.3389/fpls.2013.00418

Dufossé K., Gabrielle B., Drouet J.L., Bessou C., 2013. Using agroecosystem modeling to improve the estimates of N2O emissions in the Life-Cycle Assessment of biofuels. Waste and Biomass Valorization, 4, 3, 593-606. doi:10.1007/s12649-012-9171-1

Flechard C.R., Massad R.S., Loubet B., Personne E., Simpson D., Bash J.O., Cooter E.J., Nemitz  E., Sutton M.A., 2013. Advances in understanding, models and parameterizations of biosphere-atmosphere ammonia exchange. Biogeosciences, 10, 5183-5225 open accessdoi:10.5194/bg-10-5183-2013

Gabrielle B., Nguyen The N., Maupu P., Vial E., 2013. Life cycle assessment of eucalyptus short rotation coppices for bioenergy production in southern France. Global Change Biology Bioenergy, 5, 1, 30-42. doi:10.1111/gcbb.12008

Garnier J., Vilain G., Silvestre M., Billen G., Jehanno S., Poirier D., Martinez A., Decuq C., Cellier P., Abril G., 2013. Budget of methane emissions from soils, livestock and the river network at the regional scale of the Seine basin (France). Biogeochemistry, 116, 1-3, 199-214. doi:10.1007/s10533-013-9845-1

Gigot C., Saint-Jean S., Huber L., Maumené C., Kerhornou B., Vallavielle-Pope C., 2013. Protective effects of a wheat cultivar mixture against splash-dispersed Septoria tritici blotch epidemics. Plant Pathology, 62, 5, 1011-1019. doi:10.1111/ppa.12012

Godard C., Boissy J., Gabrielle B., 2013. Life-cycle assessment of local feedstock supply scenarios to compare candidate biomass sources. Global Change Biology Bioenergy, 5, 1, 16–29. doi:10.1111/j.1757-1707.2012.01187.x

Goglio P., Colnenne-David C., Laville P., Doré T., Gabrielle B., 2013. 29 % N2O emission reduction from a modelled low-greenhouse gas cropping system during 2009–2011. Environmental Chemistry Letters, 11, 2, 143-149. doi:10.1007/s10311-012-0389-8

Gu J., Nicoullaud B., Rochette P., Grossel A., Hénault C., Cellier P., Richard G., 2013. A regional experiment suggests that soil texture is a major control of N2O emissions from tile-drained winter wheat fields during the fertilization period. Soil Biology and Biochemistry, 60, 134–141. doi:10.1016/j.soilbio.2013.01.029

Humblot P., Leconte-Demarsy D., Clerino P., Szopa S., Castell J.F., Jayet P.A., 2013. Assessment of ozone impacts on farming systems: A bio-economic modeling approach applied to the widely diverse French case. Ecological Economics, 85, 50-58. doi:10.1016/j.ecolecon.2012.10.012

Jeuffroy M.H., Baranger E., Carrouée B., de Chezelles E., Gosme M., Hénault C., Schneider A., Cellier P., 2013. Nitrous oxide emissions from crop rotations including wheat, rapeseed and dry pea. Biogeosciences, 10, 1787-1797 open accessdoi:10.5194/bg-10-1787-2013

Katerji N., Campi P., Mastrorilli M., 2013. Productivity, evapotranspiration, and water use efficiency of corn and tomato crops simulated by AquaCrop under contrasting water stress conditions in the Mediterranean region. Agricultural Water Management, 130, 14-26. doi:10.1016/j.agwat.2013.08.005

Loubet B., Cellier P., Fléchard C., Zurfluh O., Irvine M., Lamaud E., Stella P., Roche R., Durand B., Flura D., Masson S., Laville P., Garrigou D., Personne E., Chelle M., Castell J.F., 2013. Investigating discrepancies in heat, CO2 fluxes and O3 deposition velocity over maize as measured by the eddy-covariance and the aerodynamic gradient methods. Agricultural and Forest Meteorology, 169, 35-50. doi:10.1016/j.agrformet.2012.09.010

Ney B., Bancal M.O., Bancal P., Bingham I.J., Foulkes J., Gouache D., Paveley N., Smith J., 2013. Crop architecture and crop tolerance to fungal diseases and insect herbivory. Mechanisms to limit crop losses. European Journal of Plant Pathology, 135, 3, 561-580 (Special issue Architecture and Epidemiology) doi:10.1007/s10658-012-0125-z

Oswald R., Behrendt T., Ermel M., Wu D., Su H., Cheng Y., Breuninger C., Moravek A., Mougin E., Delon C., Loubet B., Pommerening-Roser A., Sorgel M., Poschl U., Hoffmann T., Andreae M.O., Meixner F.X., Trebs I., 2013. HONO Emissions from Soil Bacteria as a Major Source of Atmospheric Reactive Nitrogen. Science, 341, 6151, 1233-1235. doi:10.1126/science.1242266

Petit C., Loubet B., Rémy E., Aubry C., Duguay F., Missonnier J., Cellier P., Feiz A.A., Blondeau C., Mauclair C., Durand B., 2013. Dépôt de polluants sur les espaces agricoles à proximité des voies de transport en Île-de-France : Quantification, perception et adaptation des acteurs. VertigO - la revue électronique en sciences de l'environnement, HS 15 "Pollutions atmosphériques, transport et agriculture" (open access)doi:10.4000/vertigo.12833

Rahantaniaina M.S., Tuzet A., Mhamdi A., Noctor G., 2013. Missing links in understanding redox signaling via thiol/disulfide modulation: how is glutathione oxidized in plants ? Frontiers in Plant Science, 4, article no 477, 13 p. doi:10.3389/fpls.2013.00477

Stella P., Personne E., Lamaud E., Loubet B., Trebs I., Cellier P., 2013. Assessment of the total, stomatal, cuticular, and soil 2 year ozone budgets of an agricultural field with winter wheat and maize crops. Journal of Geophysical Research-Biogeosciences, 118, 3, 1120–1132. doi:10.1002/jgrg.20094

Sutton M.S., Reis S., Riddick S.N., Dragosits U., Nemitz E., Theobald M.R., Tang Y.S., Braban C.F., Vieno M., Dore A.J., Mitchell R.F., Wanless S., Daunt F., Fowler D., Blackall T.D., Milford C., Flechard C.R., Loubet B., Massad R., Cellier P., Personne E.,et al, 2013. Toward a climate-dependent paradigm of ammonia emission and deposition. Philosophical Transactions of the Royal Society of London - B Biological Sciences, 368, article no 20130166, 13 p.  Sp. issue The global nitrogen cycle in the 21st century. doi:10.1098/rstb.2013.0166

Tivoli B., Calonnec A., Richard B., Ney B., Andrivon D., 2013. Current knowledge on plant/canopy architectural traits that reduce the expression and development of epidemics. European Journal of Plant Pathology,  135, 3, 471-478 (Special issue Architecture and Epidemiology)  doi:10.1007/s10658-012-0066-6

Viard A., Hénault C., Rochette P., Kuikman P., Flénet F., Cellier P., 2013. Le protoxyde d’azote (N2O), puissant gaz à effet de serre émis par les sols agricoles : méthodes d’inventaire et leviers de réduction. OCL Oléagineux Crops Gras Lipides, 20, 2, 108-118. doi:10.1684/ocl.2013.0501

Widlowski J.L., Pinty B., Lopatka M., Atzberger C., Buzica D., Chelle M., Disney M., Gastellu-Etchegorry J.P., Gerboles M., Gobron N., Grau E., Huang H., Kallel A., Kobayashi H., Lewis P.E., Qin W., Schlerf M., Stuckens J., Xie D., 2013. The fourth Radiation Transfer Model Intercomparison (RAMI-IV): Proficiency testing of canopy reflectance models with ISO-13528. Journal of Geophysical Research-D Atmospheres, 118, 13, 6869–6890. doi:10.1002/jgrd.50497