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Publications

(since 2005)

2023

^[204]	Amezrou R, Ducasse A, Compain J, Lapalu N, Pitarch A, Dupont L, Confais J, Goyeau H, Kema GHJ, Croll D, Amselem J, Sanchez-Vallet A, Marcel TC. 2023. Whole-genome sequencing reveals diverse mechanisms underlying quantitative pathogenicity and host adaptation in a fungal plant pathogen. bioRxiv, non peer-reviewed [doi]
^[203]	Sarthou J-P, Sester M, Lamichhane J-R, Aubertot J-N, Sarthou V, Suffert F. 2023. Effet des pratiques d’ACS sur les maladies et leurs conséquences sur l’état sanitaire des cultures. In: L’agriculture de conservation des sols, Cordeau S, Maron PA, Sarthou JP, Chauvel B (Eds), Quae Editions, in press.
^[202]	Suffert F (coord.), Coleno F, Sache I, Barbier M, Prete G, Forget-Richard F, Oswald I, Smith I, Suffert M, Chatot C. 2023. Science, savoirs et société : produire et utiliser des connaissances en phytopathologie pour mieux évaluer et gérer les risques biologiques pour la santé des végétaux (chapitre VI). In: Phytopathologie, seconde édition, Reignault P, Sache I, Choquer M, Corio-Coster MF, Dellagi A, Suffert F (eds.), De Boeck Supérieur, in press.

2022

^[201]	Amezrou R, Audéon C, Compain J, Gélisse S, Ducasse A, Saintenac C, Lapalu N, Orford S, Croll D, Amselem J, Fillinger S, Marcel TC. 2022. A secreted protease-like protein in Zymoseptoria tritici is responsible for avirulence on Stb9 resistance gene in wheat. bioRxiv, non peer-reviewed [doi]
^[200]	Azzimonti G, Papaïx J, Lannou C, Goyeau H. 2022. Contribution of the life-history traits of a plant pathogen to the development of field epidemics. Plant Pathology 71: 1344-1354 [doi]
^[199]	Barroso-Bergadà D, Massot M, Vignolles N, Faivre d’Arcier J, Chancerel E, Guichoux E, Walker A-S, Vacher C, Bohan DA, Laval V, Suffert F. 2022. NGS data reveals the phyllosphere microbiome of wheat plants infected by the fungal pathogen Zymoseptoria tritici. Phytobiomes Journal, in press [doi]
^[198]	Bellah H, Gazeau G, Gélisse S, Amezrou R, Marcel TC, Croll D. A highly multiplexed assay to monitor virulence, fungicide resistance and gene flow in the fungal wheat pathogen Zymoseptoria tritici. bioRxiv, non peer-reviewed [doi]
^[197]	Bernard F, Chelle M, Riahi El Kamel O, Pincebourde S, Sache I, Suffert F. 2022. Daily fluctuations in leaf temperature modulate the development of a foliar pathogen. Agricultural Forest Meteorology 322: 109031 [doi]
^[196]	Boixel A-L, Chelle M, Suffert F. 2022. Patterns of thermal adaptation in a worldwide plant pathogen: local diversity and plasticity reveal two-tier dynamics. Ecology and Evolution 12: e8515 [doi]
^[195]	Boixel A-L, Gélisse S, Marcel TC, Suffert F. 2022. Differential tolerance of Zymoseptoria tritici to altered optimal moisture conditions during the early stages of wheat infection. Journal of Plant Pathology 104: 495–507 [doi]
^[194]	El Amil R, Shykoff JA, Vidal T, Boixel A-L, Leconte M, Hovmøller MS, Nazari K, de Vallavieille-Pope C. 2022. Diversity of thermal aptitude of Middle Eastern and Mediterranean Puccinia striiformis f. sp. tritici isolates from different altitude zones. Plant Pathology 71: 1674-1687 [doi]
^[193]	Feurtey A, Lorrain C, McDonald MC, Milgate A, Solomon P, Warren R, Puccetti G, Scalliet G, Torriani S, Gout L, Marcel T, Suffert F, Alassimone J, Lipzen A, Yoshinaga Y, Daum C, Barry K, Grigoriev I, Goodwin SB, Genissel A, Seidl MF, Stukenbrock EH, Lebrun M-H, Kema G, McDonald BA, Croll D. 2022. A thousand-genome panel retraces the global spread and climatic adaptation of a major fungal crop pathogen. bioRxiv, non peer-reviewed [doi]
^[192]	Fontyn C, Zippert A-C, Delestre G, Marcel TC, Suffert F, Goyeau H. 2022. Is virulence phenotype evolution driven exclusively by Lr gene deployment in French Puccinia triticina populations? Plant Pathology 71: 1511-1524 [doi]
^[191]	Fontyn C, Meyer K, Boixel A-L, Delestre G, Piaget E, Picard C, Suffert F, Marcel TC, Goyeau H. 2022. Evolution within a given virulence phenotype (pathotype) is driven by changes in aggressiveness: a case study of French wheat leaf rust populations. bioRxiv, non peer-reviewed [doi]
^[190]	Hovmøller MS, Patpour M, Rodriguez-Algaba J, Randazzo B, Villegas D, Shamanin V, Berlin A, Flath K, Czembor P, Hanzalova A, Sliková S, Skolotneva ES, Jin Y, Szabo L, Meyer KJ, Valade R, Thach T, Hansen JG, Justesen AF. 2022. Wheat stem rust back in Europe: diversity, prevalence and impact on host resistance. Frontiers in Plant Science 13: 882440 [doi]
^[189]	Karisto P, Suffert F, Mikaberidze A. 2022. Measuring splash-dispersal of a major wheat pathogen in the field. PhytoFrontiers 2: 30-40 [doi]
^[188]	Karisto P, Suffert F, Mikaberidze A. 2022. Spatially-explicit modeling improves empirical characterization of dispersal. bioRxiv, non peer-reviewed [doi]
^[187]	Langlands-Perry C, Cuenin M, Bergez C, Ben Krima S, Gélisse S, Sourdille P, Valade R, Marcel TC. 2022. Resistance of the wheat cultivar ‘Renan’ to Septoria leaf blotch explained by a combination of strain specific and strain non-specific QTL mapped on an ultra-dense genetic map. Genes 13: 100 [doi]
^[186]	Lapalu N, Simon A, Demenou B, Paumier D, Guillot M-P, Gout L, Suffert F, Valade R. 2022. Complete genome sequences of Septoria linicola: a resource for studying a damaging flax pathogen. Molecular Plant-Microbe Interactions, in press [doi]
^[185]	McDonald BA, Suffert F, Bernasconi A, Mikaberidze A. 2022. How large and diverse are field populations of fungal plant pathogens? The case of Zymoseptoria tritici. Evolutionary Applications 15: 1360-1373 [doi]
^[184]	Orellana-Torrejon C, Vidal T, Boixel A-L, Gélisse S, Saint-Jean S, Suffert F. 2022. Annual dynamics of Zymoseptoria tritici populations in wheat cultivar mixtures: a compromise between the efficiency and durability of a recently broken-down resistance gene? Plant Pathology 71: 289-303 [doi]
^[183]	Orellana-Torrejon C, Vidal T, Gazeau G, Boixel A-L, Gélisse S, Lageyre J, Saint-Jean S, Suffert F. 2022. Multiple scenarios for sexual crosses in the fungal pathogen Zymoseptoria tritici on wheat residues: potential consequences for virulence gene transmission. Fungal Genetics and Biology 163: 103744 [doi]
^[182]	Orellana-Torrejon C, Vidal T, Saint-Jean S, Suffert F. 2022. The impact of wheat cultivar mixtures on virulence dynamics in Zymoseptoria tritici populations persist after interseason sexual reproduction. Plant Pathology 71: 1537-1549 [doi]
^[181]	Rodriguez-Algaba J, Hovmøller MS, Schulz P, Hansen JG, Lezaun JA, Joaquim J, Randazzo B, Czembor P, Zemeca L, Slikova S, Hanzalová A, Holdgate S, Wilderspin S, Mascher F, Suffert F, Leconte M, Flath K, Justesen AF. 2022. Stem rust on barberry species in Europe: Host specificities and genetic diversity. Frontiers in Genetics 13: 988031 [doi]
^[180]	Suffert F. 2022. La Russie et la Chine instrumentalisent-elles la réglementation phytosanitaire à des fins géopolitiques ? The Conversation, 25 avril 2022 [doi]
^[179]	Suffert F, Suffert M. 2022. ‘Phytopathological strolls’ in the dual context of COVID-19 lockdown and IYPH2020: transforming constraints into an opportunity for public education about plant pathogens. Plant Pathology 71: 30-42 [doi]
^[178]	Tibi A (coord.), Martinet V (coord.), Vialatte A (coord.), Alignier A, Angeon V, Bohan DA, Bougherara D, Cordeau S, Courtois P, Deguine J-P, Enjalbert J, Fabre F, Fréville H, Grateau R, Grimonprez B, Gross N, Hannachi M, Launay M, Lelièvre V., Lemarié S, Martel G, Navarrete M, Plantegenest M, Ravigné V., Rusch A, Suffert F, Thoyer S. 2022. Protéger les cultures en augmentant la diversité végétale des espaces agricoles. Synthèse du rapport d’ESCo. INRAE, 86 p.
^[177]	Valade R, Boixel A-L, Meyer K, Suffert F. 2022. 2021, l’odyssée de l’espèce Puccinia graminis f. sp. tritici : retour sur une année exceptionnelle qui pose la question de l’endémicité de la rouille noire du blé en France et incite à maintenir l’effort d’épidémiosurveillance en systèmes céréaliers. Phytoma - La santé des végétaux 754: 45-50 [doi]
^[176]	Vialatte A, Tibi A, Alignier A, Angeon V, Bedoussac L, Bohan DA, Bougherara D, Carpentier A, Castagneyrol B, Cordeau S, Courtois P, Deguine J-P, Enjalbert J, Fabre F, Féménia F, Fréville H, Goulet F, Grateau R, Grimonprez B, Gross N, Hannachi M, Jeanneret P, Kuhfuss L, Labarthe P, Launay M, Lefebvre M, Lelièvre V, Lemarié S, Martel G, Masson A, Navarrete M, Plantegenest M, Ravigné V, Rusch A, Suffert F, Tapsoba A, Thérond O, Thoyer S, Martinet V. 2021. Promoting crop pest control by plant diversification in agricultural landscapes: a conceptual framework for analysing feedback loops between agro-ecological and socio-economic effects. Advances in Ecological Research 65: 133-165 [doi]
^[175]	Vidal T, Boixel A-L, Maghrebi E, Perronne R, du Cheyron P, Enjalbert J, Leconte M, de Vallavieille-Pope C. 2022. Success and failure of invasive races of plant pathogens: The case of Puccinia striiformis f. sp. tritici in France. Plant Pathology 71: 1525-1536 [doi]

2021

^[174]	Fabre F, Carpentier F, Papaïx J, Boixel AL, Berthier K. 2021. Diversifier les paysages cultivés : état des connaissances et perspectives de recherche. In: L’immunité des plantes, Lannou C, Carenta C, Roby D, Ravigné V, Hannachi M, Moury B (Eds), Quae Editions, p. 209-220 ISBN 978-2-7592-3233-8
^[173]	Goyeau H, Valade R, de Vallavieille‐Pope C, Leconte M, Massé J, Bonnefoy M, Orlando B, Maumené C, Robin N, Thibord J-B. 2021. Maladies et bioagresseurs : bien les connaître pour une protection intégrée efficace. In: Blé dur : synthèse des connaissances pour une filière durable, Abecassis J, Massé J, Allaoua A (Eds), L'immunité végétale, Quae Editions, p. 167-197 ISBN 978-2-7592-3233-8
^[172]	Goyeau H, Halkett F, Le Cam B, Montarry J, Le May C. 2021. Les contournements de résistance : mécanismes, dynamiques et conséquences. In: L’immunité des plantes, Lannou C, Carenta C, Roby D, Ravigné V, Hannachi M, Moury B (Eds), Quae Editions - Editions ARVALIS, p. 167-190 ISBN 978-2-8179-0414-6
^[171]	Laval V, Kerdraon L, Barret M, Boudier B, Liabot A-L, Marais C, Balesdent M, Le Saux M, Suffert F. 2021. Assessing the cultivability of bacteria and fungi from arable crop residues using metabacoding data as a reference. Diversity, 13:404 [doi]
^[170]	Moury B, Audergon JM, Baudracco-Arnas S, Ben Krima S, Bertrand F, Boissot N, Buisson M, Caffier V, Cantet M, Chanéac S, Constant C, Delmotte F, Dogimont C, Doumayrou J, Fabre F, Fournet S, Grimault V, Jaunet T, Justafré I, Lefebvre V, Losdat D, Marcel TC, Montarry J, Morris C, Omrani M, Paineau M, Perrot S , Pilet-Nayel ML, Ruellan Y. 2021. The quasi-universality of nestedness in the structure of quantitative plant-parasite interactions. Peer Community Journal, e44 [doi]
_[169]	Ouaja M, Bahri BA, Aouini L, Ferjaoui S, Medini M, Marcel TC, Hamza S. 2021. Morphological characterization and genetic diversity analysis of Tunisian durum wheat (Triticum turgidum var. durum) accessions. BMC Genomic Data 22: 2-17 [doi]
^[168]	Perronne R, Dubs F, de Vallavieille-Pope C, Leconte M, du Cheyron P, Cadot V, Vidal T, Enjalbert J. 2021. Spatiotemporal changes in varietal resistance to wheat yellow rust in France reveal an increase in field resistance level during the period 1985–2018. Phytopathology, 111:1602-1612 [doi]
^[167]	Vidal T, Gauffreteau A, Enjalbert J, Suffert F. 2021. Mélanger les variétés pour construire des peuplements plus résistants aux bioagresseurs. In: L’immunité des plantes, Lannou C, Carenta C, Roby D, Ravigné V, Hannachi M, Moury B (Eds), Quae Editions, p. 221-232 ISBN 978-2-7592-3233-8

2020

^[166]	Ben Krima S, Slim A, Gélisse S, Houki H, Nadaud I, Sourdille P, Yahyaoui A, Ben M’Barek S, Suffert F, Marcel TC. 2020. Life story of Tunisian durum wheat landraces revealed by their genetic and phenotypic diversity. bioRxiv, not peer-reviewed [doi]
^[165]	El Amil R, Ali S, Bahri B, Leconte M, de Vallavieille‐Pope C, Nazari K. 2020. Pathotype diversification in the invasive PstS2 clonal lineage of Puccinia striiformis f. sp. tritici causing yellow rust on durum and bread wheat in Lebanon and Syria in 2010‐2011. Plant Pathology 69: 618-630 [doi]
^[164]	Kerdraon L, Barret M, Balesdent M, Suffert F, Laval V. 2020. Impact of a resistance gene against a fungal pathogen on the plant host residue microbiome: the case of the Leptosphaeria maculans-Brassica napus pathosystem. Molecular Plant Pathology 21: 1445-1558 [doi]
^[163]	Ouaja M, Aouini L, Bahri B, Ferjaoui S, Medini M, Marcel TC, Hamza S. 2020. Identification of valuable sources of resistance to Zymoseptoria tritici in the Tunisian durum wheat landraces. European Journal of Plant Pathology 156: 647-661 [doi]
^[162]	Paumier D, Bammé B, Penaud A, Valade R, Suffert F. 2020. First report of the sexual stage of the flax pathogen Mycosphaerella linicola in France and its impact on pasmo epidemiology. Plant Pathology 70: 175-183 [doi]
^[161]	Phan HTT, Jones DAB, Rybak K, Dodhia KN, Lopez-Ruiz FJ, Valade R, Gout L, Lebrun MH, Brunner PC, Oliver RP, Tan KC. 2020. Low amplitude boom-and-bust cycles define the Septoria nodorum blotch interaction. Frontiers in Plant Science 10: 1785 [doi]
^[160]	Vidal T, Saint-Jean S, Lusley P, Leconte M, Ben Krima S, A-L. Boixel, Wheatamix consortium, de Vallavieille-Pope C. 2020. Cultivar mixture effects on disease and yield remain despite diversity in wheat height and earliness. Plant Pathology 69: 1148-1160 [doi]

2019

^[159]	Boixel AL, Chelle M, Suffert F. 2019. Patterns of thermal adaptation in a worldwide plant pathogen: local diversity and plasticity reveal two-tier dynamics. bioRxiv, not peer-reviewed [doi]
^[158]	Boixel AL, Delestre G, Legeay J, Chelle M, Suffert F. 2019. Phenotyping thermal responses of yeasts and yeast-like microorganisms at the individual and population levels: proof-of-concept, development and application of an experimental framework to a plant pathogen. Microbial Ecology 78: 42-56 [doi]
^[157]	Coriton O, Jahier J, Leconte M, Huteau V, Trotoux G, Dedryver F, de‐Vallavieille‐Pope C. 2019. Double dose efficiency of the yellow rust resistance gene Yr17 in bread wheat lines. Plant Breeding 139: 263-271 [doi]
^[156]	El Amil R, de Vallavieille‐Pope C, Leconte M, Nazari K. 2019. Diversity of genes for resistance to stripe rust in wheat elite lines, commercial varieties and landraces from Lebanon and Syria. Phytopathologia Mediterranea 58: 607-627 [doi]
^[155]	Garnault M, Duplaix C, Leroux P, Couleaud G, Carpentier F, David O, Walker A-S. 2019. Spatiotemporal dynamics of fungicide resistance in the wheat pathogen Zymoseptoria tritici in France. Pest Management Science 75: 1794-1807 [doi]
^[154]	Kolmer J, Ordonez ME, German SE, Morgunov A, Pretorius ZA, Visser B, Goyeau H, Anikster Y, Acevedo M. 2019. Multilocus genotypes of the wheat leaf rust fungus Puccinia triticina in worldwide regions indicate past and current long distance migration. Phytopathology 109: 1453-1463 [doi]
^[153]	Kerdraon L, Balesdent M-H, Barret M, Laval V, Suffert F. 2019. Crop residues in wheat-oilseed rape rotation system: a pivotal, shifting platform for microbial meetings. Microbial Ecology 4: 931-945 [doi]
^[152]	Kerdraon L, Barret M, Laval V, Suffert F. 2019. Differential dynamics of microbial community networks help identify microorganisms interacting with residue-borne pathogens: the case of Zymoseptoria tritici in wheat. Microbiome, 7: 125 [doi]
^[151]	Kerdraon L, Laval V, Suffert F. 2019. Microbiomes and pathogen survival in crop residues, an ecotone between plant and soil. Phytobiomes Journal 3: 246-255 [doi]
^[150]	Mercier A, Carpentier F, Duplaix C, Auger A, Pradier J-M, Viaud M, Gladieux P, Walker A-S. 2019. The polyphagous plant pathogenic fungus Botrytis cinerea encompasses host-specialized and generalist populations. Environmental Microbiology 21: 4808-4821 [doi]
^[149]	Morais D, Duplaix C, Sache I, Laval V, Suffert F, Walker A-S. 2019. Overall stability in the genetic structure of a Zymoseptoria tritici population from epidemic to interepidemic stages at a small spatial scale. European Journal of Plant Pathology 154: 423-436 [doi]

2018

^[148]	Ali S, Sharma S, Leconte M, Shah SJA, Duveiller E, Enjalbert J, de Vallavieille-Pope C. 2018. Low pathotype diversity in a recombinant Puccinia striiformis population through convergent selection at the Eastern part of Himalayan centre of diversity (Nepal). Plant Pathology 67: 810-820 [doi]
^[147]	de Vallavieille-Pope C, Bahri B, Leconte M, Zurfluh O, Belaid Y, Maghrebi E, Huber L, LaunayM, BancalMO. 2018. Thermal generalist behavior of invasive Puccinia striiformis f. sp. tritici strains under current and future climate conditions. Plant Pathology 67: 1307-1320 [doi]
^[146]	Robin MH, Bancal MO, Cellier V, Délos M, Felix I, Launay M, Magnard A, Olivier A, Robert C, Rolland B, Sache I, Aubertot JN. 2018. IPSIM-Web, an online resource for promoting qualitative aggregative hierarchical network models to predict plant disease risk: application to brown rust on wheat. Plant Disease 102: 488-499 [doi]
^[145]	Sanchez-Vallet A, Hartmann FE, Marcel T, Croll D. 2018. Nature's genetic screens: using genome-wide association studies for effector discovery. Molecular Plant Pathology 19: 3-6 [doi]
^[144]	Suffert F, Delestre G, Gélisse S. 2018. Sexual reproduction in the fungal foliar pathogen Zymoseptoria tritici is driven by antagonistic density-dependence mechanisms. Microbial Ecology 77: 110-123 [doi]
^[143]	Suffert F, Goyeau H, Sache I, Carpentier F, Gélisse S, Morais D, Delestre G. 2018. Epidemiological trade-off between intra- and interannual scales in the evolution of aggressiveness in a local plant pathogen population. Evolutionary Applications 11: 768-780 [doi]
^[142]	Suffert F, Thompson R. 2018. Some reasons why the latent period should not always be considered constant over the course of a plant disease epidemic. Plant Pathology 67: 1831-1840 [doi]
^[141]	Vidal T, Gigot C, de Vallavieille-Pope C, Huber L, Saint-Jean S. 2018. Contrasting plant height can improve the control of rain-borne diseases in wheat cultivar mixture: modelling splash dispersal in 3D canopies. Annals of Botany 121: 1299-1308 [doi]
^[140]	Willocquet L, Félix I, de Vallavieille‐Pope C, Savary S. 2018. Reverse modelling to estimate yield losses caused by crop diseases. Plant Pathology 67: 1669-1679 [doi]

2017

^[139]	Fried G, Chauvel C, Reynaud P, Sache I. 2017. Decreases in crop production by non-native weeds, pests, and pathogens. In: Vilà M, Hulme PE (Eds.), Impact of biological invasions on ecosystem services, Springer, p. 83-101 [doi]
^[138]	Genissel A, Confais J, Lebrun MH, Gout L. 2017. Association genetics in plant pathogens: minding the gap between the natural variation and the molecular function. Frontiers in Plant Science, 8: 1301 [doi]
^[137]	Lof ME, de Vallavieille-Pope C, van der Werf W. 2017. Achieving durable resistance against plant diseases; Scenario analysis with a national scale spatially explicit model for a wind dispersed plant disease. Phytopathology 107: 580-589 [doi]
^[136]	Mumford J, Leach AW, Holt J, Suffert F, Sache I, Moignot B, Hamilton RA. 2017. Integrating crop bioterrorism hazards into pest risk assessment tools. In: Gullino ML, Stack J, Fletcher J, Mumford J (Eds.), Practical tools for plant and food biosecurity, Springer, p. 121-142 [doi]
^[135]	Ndoumbe Nkeng M, Efombagn Mousseni IB, Bidzanga Nomo L, Sache I, Cilas C. 2017. Spatio-temporal dynamics on a plot scale of cocoa black pod rot caused by Phytophthora megakarya in Cameroon. European Journal of Plant Pathology 147: 579-590 [doi]
^[134]	Perronne R, Diguet S, de Vallavieille-Pope C, Leconte M, Enjalbert J. 2017. A framework to characterize the commercial life cycle of crop varieties: Application to the case study of the influence of yellow rust epidemics on French bread wheat varieties. Field Crops Research 209: 159-167 [doi]
^[133]	Savary S, Djurle A, Yuen J, Ficke A, Rossi V, Esker P, Fernandes JM, Del Ponte E, Kumar J, Madden LV, Paul PA, McRoberts N, Singh PK, Huber L, de Vallavieille-Pope C, Saint-Jean S, Willocquet L. 2017. A white paper on global wheat health based on scenario development and analysis. Phytopathology 107: 1109-1122 [doi]
^[132]	Soubeyrand S, Garreta V, Monteil C, Suffert F, Goyeau H, Berder J, Berge O, Moinard J, Fournier E, Tharreau D, Morris C, Sache I. 2017. Testing differences between pathogen compositions with small samples and sparse data. Phytopathology 107: 1199-1208 [doi]
^[131]	Suffert F. 2017. Characterization of the threat resulting from plant pathogens use as anti-crop bioweapons: an EU perspective on agroterrorism. In: Gullino ML, Stack J, Fletcher J, Mumford J (Eds.), Practical tools for plant and food biosecurity, Springer, p. 31-60 [doi]
^[130]	Vidal T, Boixel A-L, Durand B, de Vallavieille-Pope C, Huber L, Saint-Jean S. 2017. Reduction of fungal disease spread in cultivar mixtures: impact of canopy architecture on rain-splash dispersal and on crop microclimate. Agricultural and Forest Meteorology 246: 154-161 [doi]
^[129]	Vidal T, Lusley P, Leconte M, de Vallavieille-Pope C, Huber L, Saint-Jean S. 2017. Cultivar architecture modulates spore dispersal by rain splash: a new perspective to reduce disease progression in cultivar mixture. PLoS ONE 12: e0187788 [doi]
^[128]	Walker AS, Ravigné V, Rieux A, Ali S, Carpentier F, Fournier E. 2017. Fungal adaptation to contemporary fungicide applications: the case of Botrytis cinerea populations from Champagne vineyards (France). Molecular Ecology 26: 1919-1935 [doi]
^[127]	Yeo FKS, Bouchon R, Kuijken R, Loriaux A, Boyd C, Niks RE, Marcel TC. 2017. High-resolution mapping of genes involved in plant stage-specific partial resistance of barley to leaf rust. Molecular breeding 37: 45 [doi]
^[126]	Zhong Z, Marcel TC, Hartmann FE, Ma X, Plissonneau C, Zala M, Ducasse A, Confais J, Compain J, Lapalu N, Amselem J, McDonald BA, Croll D, Palma-Guerrero J. 2017. A small secreted protein in Zymoseptoria tritici is responsible for avirulence on wheat cultivars carrying the Stb6 resistance gene. New Phytologist 214: 619-631 [doi]

2016

^[125]	Ali S, Soubeyrand S, Gladieux P, Giraud T, Leconte M, Gautier A, Mboup M, Chen W, de Vallavieille-Pope C, Enjalbert J. 2016. CLONCASE: Estimation of sex frequency and effective population size by clonemate resampling in partially clonal organisms. Molecular Ecology Ressources 16: 845-861 [doi]
^[124]	Hovmøller MS, Walter S, Bayles R, Hubbard A, Flath K, Sommerfeldt N, Leconte M, Czembor P, Rodriguez-Algaba J, Thach T, Hansen JG, Lassen P, Justesen AF, Ali S, de Vallavieille-Pope C. 2016. Replacement of the European wheat yellow rust population by new races from centre of diversity in the near-Himalayan region. Plant Pathology 65: 402-411 [doi]
^[123]	Koyyappurath S, Atuahiva T, Le Guen R, Batina H, Le Squin S, Gautheron N, Hermann VE, Peribe J, Peribe J, Jahiel M, Steinberg C, Liew ECY, Liew ECY, Alabouvette C, Besse P, Dron M, Sache I, Laval V, Grisoni M. 2016. Fusarium oxysporum f. sp radicis-vanillae is the causal agent of root and stem rot of vanilla. Plant Pathology 65: 612-625 [doi]
^[122]	Morais D, Sache I, Suffert F, Laval V. 2016. Is the onset of Septoria tritici blotch epidemics related to local availability of ascospores? Plant Pathology 65: 250-260 [doi]
^[121]	Morais D, Gélisse S, Laval V, Sache I, Suffert F. 2016. Inferring the origin of primary inoculum of Zymoseptoria tritici from differential adaptation of resident and immigrant populations to wheat cultivars. European Journal of Plant Pathology 145: 393-404 [doi]
^[120]	Rabe F, Bosch J, Stirnberg A, Guse T, Bauer L ,Seitner D, Rabanal FA, Czedik-Eysenberg A, Uhse S, Bindics J, Genenncher B, Navarrete F, Kellner R, Ekker H, Kumlehn J, Vogel JP, Gordon SP, Marcel TC, Munsterkotters M, Walter MC, Sieber CMK, Mannhaupt G, Guldener U, Kahmann R, Djamei A. 2016. A complete toolset for the study of Ustilago bromivora and Brachypodium sp. as a fungal-temperate grass pathosystem. eLIFE 5: e20522 [doi]
^[119]	Suffert F, Delestre G, Carpentier F, Walker AS, Gazeau G, Gélisse S, Duplaix C. 2016. Fashionably late partners have more fruitful encounters: impact of the timing of co-infection and pathogenicity on sexual reproduction in Zymoseptoria tritici. Fungal Genetics and Biology 92: 40-49 [doi]
^[118]	Thach T, Ali S, de Vallavieille-Pope C, Justesen AF, Hovmoller MS. 2016. Worldwide population structure of the wheat rust fungus Puccinia striiformis in the past. Fungal Genetics and Biology 87: 1-8 [doi]
^[117]	Walter S, Ali S, Kemen E, Nazari K, Bahri BA, Enjalbert J, Hansen JG, Brown JKM, Sicheritz-Ponten T, Jones J, de Vallavieille-Pope C, Hovmøller MS, Justesen AF. 2016. Molecular markers for tracking the origin and worldwide distribution of invasive strains of Puccinia striiformis. Ecology and Evolution 6: 2790-2804 [doi]

2015

^[116]	Barnagaud JY, Papaïx J, Gimenez O, Svenning JC. 2015. Dynamic spatial interactions between the native invader Brown-headed Cowbird and its hosts. Diversity and Distributions 21: 511-522 [doi]
^[115]	Hubbard A, Lewis C, Yoshida K, Ramirez-Gonzalez RH, de Vallavieille-Pope C, Thomas J, Kamoun S, Bayles R, Uauy C, Saunders DGO. 2015. Field pathogenomics reveals the emergence of a diverse wheat yellow rust population. Genome Biology 16: 23 [doi]
^[114]	Morais D, Laval V, Sache I, Suffert F. 2015. Comparative pathogenicity of sexual and asexual spores of Zymoseptoria tritici (Septoria tritici blotch) on wheat leaves. Plant Pathology 64: 1429–1439 [doi]
^[113]	Niks RE, Alemu SK, Marcel TC, van Heyzen S. 2015. Mapping genes in barley for resistance to Puccinia coronata from couch grass and to Puccinia striiformis from brome, wheat and barley. Euphytica 206: 487-499 [doi]
^[112]	Niks RE, Qi X, Marcel TC. 2015. Quantitative resistance to biotrophic filamentous plant pathogens: concepts, misconceptions, and mechanisms. Annual Review of Phytopathology 53: 445-470 [doi]
^[111]	Papaix J, Burdon J, Zhan J, Thrall PH. 2015. Crop pathogen emergence and evolution in agro-ecological landscapes. Evolutionary Applications 8: 385-402 [doi]
^[110]	Picard M, Papaïx J, Gosselin F, Picot D, Bideau E, Baltzinger C. 2015. Temporal dynamics of seed excretion by wild ungulates: implications for plant dispersal. Ecology and Evolution 5: 2621-2632 [doi]
^[109]	Siou D, Gélisse S, Laval V, Suffert F, Lannou C. 2015. Mutual exclusion between fungal species of the FHB complex in a wheat spike. Applied and Environmental Microbiology 81: 4682-4689 [doi]
^[108]	Siou D, Gélisse S, Laval V, Repinçay C, Bourdat-Deschamps M, Suffert F, Lannou C. 2015. Interactions between head blight pathogens: consequences on disease development and toxins production in wheat spikes. Applied and Environmental Microbiology 81: 957-965 [doi]
^[107]	Soubeyrand S, Sache I, Hamelin F, Klein EK. 2015. Evolution of dispersal in asexual populations: to be independent, clumped or grouped? Evolutionary Ecology 29: 947-963 [doi]
^[106]	Suffert F, Ravigné V, Sache I. 2015. Seasonal changes drive short-term selection for fitness traits in the wheat pathogen Zymoseptoria tritici. Applied and Environmental Microbiology 81: 6367-6379 [doi]
^[105]	Yeo FKS, Wang Y, Vozabova T, Huneau C, Leroy P, Chalhoub B, Qi XQ, Niks RE, Marcel TC. 2015. Haplotype divergence and multiple candidate genes at Rphq2, a partial resistance QTL of barley to Puccinia hordei. Theoretical and Applied Genetics, 129: 289-304 [doi]
^[104]	Zhan JS, Thrall PH, Papaïx J, Xie LH, Burdon JJ. 2015. Playing on a pathogen's weakness: using evolution to guide sustainable plant disease control strategies. Annual Review of Phytopathology 53: 19-43 [doi]

2014

^[103]	Ali S, Gladieux P, Leconte M, Gautier A, Justesen AJ, Hovmøller MS, Enjalbert J, de Vallavieille-Pope C. 2014. Origin, migration routes and genetic structure of worldwide populations of the wheat yellow rust pathogen, Puccinia striiformis f. sp tritici. Plos Pathogens 10: e1003903 [doi]
^[102]	Ali S, Gladieux P, Rahman H, Saqib MS, Fiaz M, Ahmed H, Leconte M, Gautier A, Justesen AJ, Hovmøller MS, Enjalbert J, de Vallavieille-Pope C. 2014. Inferring the contribution of sexual reproduction, migration and off-season survival to the temporal maintenance of microbial populations: a case study on the wheat fungal pathogen Puccinia striiformis f.sp tritici. Molecular Ecology 23: 603-617 [doi]
^[101]	Ali S, Leconte M, Rahman H, Saqib MS, Gladieux P, Enjalbert J, de Vallavieille-Pope C. 2014. A high virulence and pathotype diversity of Puccinia striiformis f.sp tritici at its centre of diversity, the Himalayan region of Pakistan. European Journal of Plant Pathology 140: 275-290 [doi]
^[100]	Azzimonti G, Marcel TC, Robert O, Paillard S, Lannou C, Goyeau H. 2014. Diversity, specificity and impacts on field epidemics of QTLs involved in components of quantitative resistance in the wheat leaf rust pathosystem. Molecular Breeding 34:549-567 [doi]
^[99]	Barnagaud JY, Barbaro L, Papaïx J, Deconchat M, Brockerhoff EG. 2014. Habitat filtering by landscape and local forest composition in native and exotic New Zealand birds. Ecology 95: 78-87 [doi]
^[98]	Gautier A, Marcel TC, Confais J, Crane C, Kema G, Suffert F, Walker A-S. 2014. Development of a rapid multiplex SSR genotyping method to study populations of the plant pathogenic fungus Mycosphaerella graminicola. BMC Research Notes 7: 373 [doi]
^[97]	Gigot C, de Vallavieille-Pope C, Huber L, Saint-Jean S. 2014. Using virtual 3D plant architecture to assess fungal pathogen splash-dispersal in heterogeneous canopies: non-specialised disease causal agent and cultivar mixtures as a case study. Annals of Botany 114: 863-875 [doi]
^[96]	Guyot J, Condina V, Doaré F, Cilas C, Sache I. 2014. Role of ascospores and conidia in the initiation and spread of South American leaf blight in a rubber tree plantation. Plant Pathology 63: 510-518 [doi]
^[95]	Papaïx J, Adamczyk-Chauvat K, Bouvier A, Kiêu K, Touzeau S, Lannou C, Monod H. 2014. Pathogen population dynamics in agricultural landscapes: The Ddal modelling framework. Infection,Genetics and Evolution 27: 509-520 [doi]
^[94]	Papaïx J, Burdon JJ, Lannou C, Thrall PH. 2014. Evolution of pathogen specialisation in a host metapopulation: Joint effects of host and pathogen dispersal. PLoS Computational Biology 10, e1003633 [doi]
^[93]	Papaïx J, Touzeau S, Monod H, Lannou C. 2014. Can epidemic control be achieved by altering landscape connectivity in agricultural systems? Ecological Modelling 284: 35-47 [doi]
^[92]	Sørensen CK, Hovmøller MS, Leconte M, Dedryver F, de Vallavieille-Pope C. 2014. New races of Puccinia striiformis in Europe reveal race-specificity of long-term effective adult plant resistance in wheat. Phytopathology 104: 1042-1051 [doi]
^[91]	Yeo FKS, Hensel G, Vozábová T, Martin‑Sanz A, Marcel TC, Kumlehn J, Niks RE. 2014. Golden SusPtrit: a genetically well transformable barley line for studies on the resistance to rust fungi. Theoretical and Applied Genetics 127: 325-337 [doi]

2013

^[90]	Andrivon D, Giorgetti C, Baranger A, Calonnec A, Cartolaro P, Faivre R, Guyader S, Lauri PE, Lescourret F, Parisi L, Ney B, Tivoli B, Sache I. 2013. Defining and designing plant architectural ideotypes to control epidemics? European Journal of Plant Pathology 135: 611-617 [doi]
^[89]	Azzimonti G, Lannou C, Sache I, Goyeau H. 2013. Components of quantitative resistance to leaf rust in wheat cultivars: diversity, variability and specificity. Plant Pathology 62: 970-981 [doi]
^[88]	Bernard F, Sache I, Suffert F, Chelle M. 2013. The development of a foliar fungal pathogen does react to leaf temperature! New Phytologist 198: 232-240 [doi]
^[87]	Calonnec A, Burie JB, Langlais M, Guyader S, Saint-Jean S, Sache I, Tivoli B. 2013. Impacts of plant growth and architecture on pathogen processes and their consequences for epidemic behaviour. European Journal of Plant Pathology 135: 479-497 [doi]
^[86]	Gigot C, Saint-Jean S, Huber H, Kerhornou B, Maumené C, Leconte M, de Vallavieille Pope C. 2013. Protective effects of a wheat cultivar mixture against splash-dispersed Septoria tritici blotch epidemics. Plant Pathology 62: 1011-1019 [doi]
^[85]	Gimenez O, Abadi F, Barnagaud JY, Blanc L, Buoro M, Cubaynes S, Desprez M, Gamelon M, Guilhaumon F, Lagrange P, Madon B, Marescot L, Papadatou E, Papaïx J, Péron G, Servanty S. 2013. How can quantitative ecology be attractive to young scientists? Balancing computer/desk work with fieldwork. Animal Conservation 16: 134-136 [doi]
^[84]	Kolmer JA, Hanzalova A, Goyeau H, Bayles R, Morgounov A. 2013. Genetic differentiation of the wheat leaf rust fungus Puccinia triticina in Europe. Plant Pathology 62: 21-31 [doi]
^[83]	Papaix J, David O, Lannou C, Monod H. 2013. Dynamics of adaptation in spatially heterogeneous metapopulations. PloS one 8: e54697 [doi]
^[82]	Pariaud B, van den Berg F, van den Bosch F, Powers SJ, Kaltz O, Lannou C. 2013. Shared influence of pathogen and host genetics on a trade-off between latent period and spore production capacity in the wheat pathogen, Puccinia triticina. Evolutionary Applications 6: 303-312 [doi]
^[81]	Sapoukhina N, Paillard S, de Vallavieille-Pope C. 2013. Quantitative plant resistance in cultivar mixtures: wheat yellow rust as a modelling case study. New Phytologist 200: 888-897 [doi]
^[80]	Schilte C, Staikovsky F, Couderc T, Madec Y, Carpentier F, Kassab S, Albert ML, Lecuit M, Michault A. 2013. Chikungunya virus-associated long-term arthralgia: A 36-month prospective longitudinal study. Plos Neglected Tropical Diseases 7: e2137 [doi]
^[79]	Siou D, Gélisse S, Laval V, Repinçay C, Canalès R, Suffert F, Lannou C. 2013. Effect of wheat spike infection timing on Fusarium head blight development and mycotoxin accumulation. Plant Pathology 63: 390-399 [doi]
^[78]	Soubeyrand S, Carpentier F, Guiton F, Klein EK. 2013. Approximate Bayesian computation with functional statistics. Statistical Applications in Genetics and Molecular Biology 12: 17 [doi]
^[77]	Suffert F, Sache I, Lannou C. 2013. Assessment of quantitative traits of aggressiveness in Mycosphaerella graminicola on adult wheat plants. Plant Pathology 62: 1330-1341 [doi]
^[76]	Takam Soh P, Ndoumbè-Nkeng M, Sache I, Ndong Nguema EP, Gwet H, Chadoeuf J. 2013. Development stage-dependent susceptibility of cocoa fruit to pod rot caused by Phytophthora megakarya. European Journal of Plant Pathology 135: 363-370 [doi]
^[75]	van den Berg F, Gaucel S, Lannou C, Gilligan CA, van den Bosch F. 2013. High levels of auto-infection in plant pathogens favour short latent periods: a theoretical approach. Evolutionary Ecology 27: 409-428 [doi]
^[74]	van den Berg F, Gilligan CA, van den Bosch F, Lannou C. 2013. Quantitative resistance can lead to evolutionary changes in traits not targeted by the resistance QTLs. Evolutionary Applications 7: 370-380 [doi]

2012

^[73]	Bancal M-O, Hansart A, Sache I, Bancal P. 2012. Modelling fungal sink competitiveness with grains for assimilates in wheat infected by a biotrophic pathogen. Annals of Botany 110: 113-123 [doi]
^[72]	Ben Slimane R, Bancal P, Suffert F, Bancal M-O. 2012. Localized Septoria leaf blotch lesions in winter wheat flag leaf do not accelerate apical senescence during the necrotrophic stage. Journal of Plant Pathology 94: 543-553
^[71]	Caubel J, Launay M, Lannou C, Brisson N. 2012. Generic response functions to simulate climate-based processes in models for the development of airborne fungal crop pathogens. Ecological Modelling 242: 92-104 [doi]
^[70]	de Vallavieille-Pope C, Ali S, Leconte M, Enjalbert J, Delos M, Rouzet J. 2012. Virulence dynamics and regional structuring of Puccinia striiformis f. sp tritici in France between 1984 and 2009. Plant Disease 96: 131-140 [doi]
^[69]	Goyeau H, Berder J, Czerepak C, Gautier A, Lanen C, Lannou C. 2012. Low diversity and fast evolution in the population of Puccinia triticina causing durum wheat leaf rust in France from 1999 to 2009, as revealed by an adapted differential set. Plant Pathology 61: 761-772 [doi]
^[68]	Lannou C. 2012. Variation and selection of quantitative traits in plant pathogens. Annual Review of Phytopathology 50: 319-338 [doi]
^[67]	Mboup M, Bahri B, Leconte M, De Vallavieille-Pope C, Kaltz O, Enjalbert J. 2012. Genetic structure and local adaptation of European wheat yellow rust populations: the role of temperature-specific adaptation. Evolutionary Applications 5: 341-352 [doi]
^[66]	Paillard S, Trotoux-Verplancke G, Perretant MR, Mohamadi F, Leconte M, Coedel S, de Vallavieille-Pope C, Dedryver F. 2012. Durable resistance to stripe rust is due to three specific resistance genes in french bread wheat cultivar Apache. Theoretical and Applied Genetics 125: 955-965 [doi]
^[65]	Pariaud B, Goyeau H, Halkett F, Robert C, Lannou C. 2012. Variation in aggressiveness is detected among Puccinia triticina isolates of the same pathotype and clonal lineage in the adult plant stage. European Journal of Plant Pathology 134: 733-743 [doi]
^[64]	Picot A, Hourcade-Marcolla D, Barreau C, Pinson-Gadais L, Caron D, Richard-Forget F, Lannou C. 2012. Interactions between Fusarium verticillioides and Fusarium graminearum in maize ears and consequences for fungal development and mycotoxin accumulation. Plant Pathology 61: 140-151 [doi]
^[63]	Raboin LM, Ramanantsoanirina A, Dusserre J, Razasolofonanahary F, Tharreau D, Lannou C, Sester M. 2012. Two-component cultivar mixtures reduce rice blast epidemics in an upland agrosystem. Plant Pathology 61: 1103-1111 [doi]

2011

^[62]	Ali S, Gautier A, Leconte M, Enjalbert J, de Vallavieille-Pope C. 2011. A rapid genotyping method for an obligate fungal pathogen, Puccinia striiformis f.sp tritici, based on DNA extraction from infected leaf and Multiplex PCR genotyping. BMC research notes 4: 240 [doi].
^[61]	Bahri B, Shah SJA, Hussain S, Leconte M, Enjalbert J, de Vallavieille-Pope C. 2011. Genetic diversity of the wheat yellow rust population in Pakistan and its relationship with host resistance. Plant Pathology 60: 649-660 [doi].
^[60]	Goyeau H, Lannou C. 2011. Specific resistance to leaf rust expressed at the seedling stage in cultivars grown in France from 1983 to 2007. Euphytica 178: 45-62 [doi].
^[59]	Huerta-Espino J, Singh RP, German S, McCallum BD, Park RF, Chen WQ, Bhardwaj SC, Goyeau H. 2011. Global status of wheat leaf rust caused by Puccinia triticina. Euphytica 179: 143-160 [doi].
^[58]	Papaix J, Goyeau H, Du Cheyron P, Monod H, Lannou C. 2011. Influence of cultivated landscape composition on variety resistance: an assessment based on wheat leaf rust epidemics. New Phytologist 191: 1095-1107 [doi].
^[57]	Picot A, Barreau C, Pinson-Gadais L, Piraux F, Caron D, Lannou C, Richard-Forget F. 2011. The dent stage of maize kernels is the most conducive for fumonisin biosynthesis under field conditions. Applied and Environmental Microbiology 77: 8382-8390 [doi].
^[56]	Sache I, Roy A-S, Suffert F, Desprez-Loustau M-L. 2011. Invasive plant pathogens in Europe. In: Pimentel D (Ed.), Biological invasions: Economic and environmental costs of alien plant, animal, and microbe species, CRC Press, p. 227-242.
^[55]	Suffert F, Sache I. 2011. Relative importance of different types of inoculum to the establishment of Mycosphaerella graminicola in wheat crops in north-west Europe. Plant Pathology 60: 878-889 [doi].
^[54]	Suffert F, Sache I, Lannou C. 2010. Early stages of Septoria tritici blotch epidemics of winter wheat: build-up, overseasoning, and release of primary inoculum. Plant Pathology 60: 166-177 [doi].
^[53]	Travadon R, Sache I, Dutech C, Stachowiak A, Marquer B, Bousset L. 2011. Absence of isolation by distance patterns at the regional scale in the fungal plant pathogen Leptosphaeria maculans. Fungal Biology 115: 649-659 [doi].
^[52]	van den Berg F, Bacaer N, Metz JAJ, Lannou C, van den Bosch F. 2011. Periodic host absence can select for higher or lower parasite transmission rates. Evolutionary Ecology 25: 121-137 [doi].

2010

^[51]	Ali S, Leconte M, Walker A-S, Enjalbert J, de Vallavieille-Pope C. 2010. Reduction in the sexability of worldwide clonal populations of Puccinia striiformis f. sp tritici. Fungal Genetics and Biology 47: 828-838 [doi].
^[50]	Barnouin J, Sache I. 2010. Les maladies émergentes. Epidémiologie chez le végétal, l'animal et l'homme. QUAE Editions. Versailles.
^[49]	Blancard D, Selosse MA, Lung-Escarmant B, Piou D, Sache I. 2010. Species diversity and drivers of spread of alien fungi (sensu lato) in Europe with a particular focus on France. Biological Invasions 12, 157-172 [doi].
^[48]	Desprez-Loustau M-L, Courtecuisse R, Robin C, Husson C, Moreau P-A, Blancard D, Selosse M-A, Lung-Escarmant B, Piou D, Sache I. 2010. Species diversity and drivers of spread of alien fungi (sensu lato) in Europe with a particular focus on France. Biological Invasions. 12: 157-172 [doi].
^[47]	Duan X, Tellier A, Wan A, Leconte M, de Vallavielle-Pope C, Enjalbert J. 2010. Puccinia striiformis f. sp tritici presents high diversity and recombination in the over-summering zone of Gansu, China. Mycologia 102: 44-53 [doi].
^[46]	Gosme M, Suffert F, Jeuffroy MH. 2010. Intensive versus low-imput cropping systems: what is the optimal partitioning of agricultural area in order to reduce pesticide use while maintaining productivity ? Agricultural Systems 103, 110-116 [doi].
^[45]	Goyeau H, Ammar K, Berder J. 2010. Virulence in Puccinia triticina for durum wheat cultivar Creso and other durum wheat cultivars carrying resistance gene Lr14a in France. Plant Disease 94: 1068-1068 [doi].
^[44]	Guyot J, Condina V, Doare F, Cilas C, Sache I. 2010. Segmentation applied to weather-disease relationships in South American leaf blight of the rubber tree. European Journal of Plant Pathology 126: 349-362 [doi].
^[43]	Picot A, Barreau C, Pinson-Gadais L, Caron D, Lannou C, Richard-Forget F. 2010. Factors of the Fusarium verticillioides-maize environment modulating fumonisin production. Critical Reviews in Microbiology 36: 221-231 [doi].
^[42]	Sache I. 2010. Les maladies émergentes dans le monde végétal. In: Encyclopaedia Universalis, Y Gautier (Ed.). La science au présent, p. 108-113.
^[41]	Sapoukhina N, Tyutyunov Y, Sache I, Arditi R. 2010. Spatially mixed crops to control the stratified dispersal of airborne fungal diseases. Ecological Modelling. 221: 2793-2800 [doi].
^[40]	Stack JP, Suffert F, Gullino ML. 2010. Bioterrorism: A threat to plant biosecurity? In: Strange, R.N., Gullino, M.L. (Eds.), Role of plant pathology in food safety and food security. Springer-Verlag. 115-132.

2009

^[39]	Bahri B, Kaltz O, Leconte M, de Vallavieille-Pope C, Enjalbert J. 2009. Tracking costs of virulence in natural populations of the wheat pathogen, Puccinia striiformis f. sp tritici. BMC Evolutionary Biology 9: 26 [doi].
^[38]	Bahri B, Leconte M, de Vallavieille-Pope C, Enjalbert J. 2009. Isolation of ten microsatellite loci in an EST library of the phytopathogenic fungus Puccinia striiformis f. sp tritici. Conservation Genetics. 10: 1425-1428 [doi].
^[37]	Bahri B, Leconte M, Ouffroukh A, de Vallavieille-Pope C, Enjalbert J. 2009. Geographic limits of a clonal population of wheat yellow rust in the Mediterranean region. Molecular Ecology. 18: 4165-4179 [doi].
^[36]	Frezal L, Robert C, Bancal M-O, Lannou C. 2009. Local Dispersal of Puccinia triticina and Wheat Canopy Structure. Phytopathology. 99: 1216-1224 [doi].
^[35]	Mboup M, Leconte M, Gautier A, Wan AM, Chen W, de Vallavieille-Pope C[1] , Enjalbert J. 2009. Evidence of genetic recombination in wheat yellow rust populations of a Chinese oversummering area. Fungal Genetics and Biology. 46: 299-307 [doi].
^[34]	Ndoumbe-Nkeng M, Efombagn MIB, Nyasse S, Nyemb E, Sache I, Cilas C. 2009. Relationships between cocoa Phytophthora pod rot disease and climatic variables in Cameroon. Canadian Journal of Plant Pathology. 31: 309-320 [doi].
^[33]	Pariaud B, Ravigne V, Halkett F, Goyeau H, Carlier J, Lannou C. 2009. Aggressiveness and its role in the adaptation of plant pathogens. Plant Pathology. 58: 409-424 [doi].
^[32]	Pariaud B, Robert C, Goyeau H, Lannou C. 2009. Aggressiveness components and adaptation to a host cultivar in wheat leaf rust. Phytopathology. 99: 869-878 [doi].
^[31]	Soubeyrand S, Enjalbert J, Kretzschmar A, Sache I. 2009. Building anisotropic sampling schemes for the estimation of anisotropic dispersal. Annals of Applied Biology. 154: 399-411 [doi].
^[30]	Suffert F, Latxague E, Sache I. 2009. Plant pathogens as agroterrorist weapons: assessment of the threat for European agriculture and forestry. Food Security. 1: 221-232 [doi].
^[29]	Travadon R, Marquer B, Ribule A, Sache I, Masson J-P, Brun H, Delourme R, Bousset L. 2009. Systemic growth of Leptosphaeria maculans from cotyledons to hypocotyls in oilseed rape: influence of number of infection sites, competitive growth and host polygenic resistance. Plant Pathology. 58: 461-469 [doi].

2008

^[28]	Guyot J, Cilas C, Sache I. 2008. Influence of host resistance and phenology on South American leaf blight of the rubber tree with special consideration of temporal dynamics. European Journal of Plant Pathology. 120: 111-124.
^[27]	Lannou C, Soubeyrand S, Frezal L, Chadoeuf J. 2008. Autoinfection in wheat leaf rust epidemics. New Phytologist. 177: 1001-1011 [doi].
^[26]	Picot A, Barreau C, Pinson-Gadais L, Caron D, Lannou C, Richard-Forget F. 2008. In vitro competition between DON and FUM producing Fusarium strains and impact on toxin production. Cereal Research Communications. 36: 517-519.
^[25]	Soubeyrand S, Enjalbert J, Sache I. 2008. Accounting for roughness of circular processes: Using Gaussian random processes to model the anisotropic spread of airborne plant disease. Theoretical Population Biology. 73: 92-103 [doi].
^[24]	Soubeyrand S, Held L, Hohle M, Sache I. 2008. Modelling the spread in space and time of an airborne plant disease. Journal of the Royal Statistical Society Series C-Applied Statistics. 57: 253-272 [doi].
^[23]	Suffert F, Barbier M, Sache I, Latxague E. 2008. Biosécurité des cultures et agroterrorisme. Une menace, des questions scientifiques et une opportunité : réactiver un dispositif d'épidémiovigilance. Le Courrier de l'Environnement 56: 67-86.
^[22]	Suffert F, Montfort F. 2008. Pathometric relationships reveal epidemiological processes involved in carrot cavity spot epidemics. European Journal of Plant Pathology. 122: 425-436 [doi].
^[21]	Suffert F, Delalande D, Prunier M, Andrivon D. 2008. Modulation of primary and secondary infections in epidemics of carrot cavity spot through agronomic management practices. Plant Pathology. 57: 109-121 [doi].
^[20]	Suffert F, Lucas J-M. 2008. Lateral roots of carrot have a low impact on alloinfections in cavity spot epidemic caused by Pythium violae. Journal of General Plant Pathology. 74: 296-301 [doi].
^[19]	Willocquet L, Aubertot J-N, Lebard S, Robert C, Lannou C, Savary S. 2008. Simulating multiple pest damage in varying winter wheat production situations. Field Crops Research. 107: 12-28 [doi].

2007

^[18]	Desprez-Loustau ML, Robin C, Buée M, Courtecuisse R, Garbaye J, Suffert F, Sache I, Rizzo D. 2007. The fungal dimension of biologic invasions. Trends in Ecology and Evolution 22: 472-480 [doi].
^[17]	Dutech C, Enjalbert J, Fournier E, Delmotte F, Barres B, Carlier J, Tharreau D, Giraud T. 2007. Challenges of microsatellite isolation in fungi. Fungal Genetics and Biology 44: 933-949 [doi].
^[16]	Goyeau H, Halkett F, Zapater MF, Carlier J, Lannou C. 2007. Clonality and host selection in the wheat pathogenic fungus Puccinia triticina. Fungal Genetics and Biology 44: 474-483 [doi].
^[15]	Latxague E, Sache I, Pinon J, Andrivon D, Barbier M, Suffert F. 2007. A methodology for assessing the risk posed by the deliberate and harmful use of plant pathogens in Europe. EPPO Bulletin 37: 427-435 [doi].
^[14]	Lopez-Villavicencio M, Jonot O, Coantic A, Hood ME, Enjalbert, J, Giraud T. 2007. Multiple infection by the anther smut pathogen are frequent and involve related strain. PLoS Pathogens 3: 1710-1715 [doi].
^[13]	Soubeyrand S, Sanchez A, Enjalbert J, Sache I. 2007. Anisotropy, in density and in distance, of the dispersal of yellow rust of wheat: Experiments in large field plots and estimation. Phytopathology 97: 1315-1324 [doi].
^[12]	Soubeyrand S, Sache I, Lannou C, Chadoeuf J. 2007. A frailty model to assess plant disease spread from individual count data. Journal of Data Science 5: 67-83.
^[11]	Travadon R, Bousset L, Brun H, Saint-Jean S, Sache I. 2007. Splash dispersal of Leptosphaeria maculans pycnidiospores and the spread of blackleg on oilseed rape. Plant Pathology 56: 595-603 [doi].

2006

^[10]	Goyeau H, Park R, Schaeffer B, Lannou C. 2006. Distribution of pathotypes with regard to host cultivars in French wheat leaf rust populations. Phytopathology 96: 264-273 [doi].
^[9]	Mille B, Belhaj Fraj M, Monod H, de Vallavieille-Pope C, 2006. Assessing four-way mixtures of winter wheat cultivars from the performances of their two-way and individual components. European Journal of Plant Pathology 114: 163-173 [doi].
^[8]	Robert C, Bancal M-O, Lannou C, Ney B. 2006. Quantification of the effects of Septoria tritici blotch on wheat leaf gas exchange with respect to lesion age, leaf number, and leaf nitrogen status. Journal of Experimental Botany 57: 225-234 [doi].
^[7]	Soubeyrand S, Chadoeuf J, Sache I, Lannou C. 2006. Residual-based specification of the random effects distribution for cluster data. Statistical Methodology 3: 464-482 [doi].

2005

^[6]	Bethenod O, Le Corre M, Huber L, Sache I. 2005. Modelling the impact of brown rust on wheat crop photosynthesis after flowering. Agricultural and Forest Meteorology 131: 41-53 [doi].
^[5]	Enjalbert J, Duan X, Leconte M, Hovmoller MS, de Vallavieille-Pope C. 2005. Genetic evidence of local adaptation of wheat yellow rust (Puccinia striiformis f. sp tritici) within France. Molecular Ecology 14:2065-2073 [doi].
^[4]	Lannou C, Hubert P, Gimeno C. 2005. Competition and interactions among stripe rust pathotypes in wheat cultivar mixtures. Plant Pathology 54: 699-712 [doi].
^[3]	Lopez-Villavicencio M, Enjalbert J, MEH, Shykoff JA, Raquin C, Giraud T. 2005. The anther smut disease on Gypsophila repens: a case of parasite sub-optimal performance following a recent host shift? Journal of Evolutionary Biology 18: 1293-1303 [doi].
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