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Archived publications



Tanaka, S., Ishihama, N., Yoshioka, H., Huser, A., O’Connell, R., Tsuji, G., Tsuge, S. & Y. Kubo (2009) Colletotrichum orbiculare ssd1mutant enhances plant basal resistance through activation of a mitogen‐activated protein kinase pathway. Plant Cell21: 2517‐2526. [DOI]

Birker, D., Heidrich, K, Takahara, H., Narusaka, M. Deslandes, L., Narusaka, Y., Reymond, M., Parker, J.E. & O’Connell, R. (2009) A locus conferring resistance to Colletotrichum higginsianum is shared by four geographically distinct Arabidopsis accessions. Plant Journal60: 602‐613. [DOI]

Rouxel T, Duplessis S, Viaud M, Amselem J, Lebrun MH. (2009). La génomique fongique, une approche essentielle pour la compréhension des maladies des plantes. Biofutur 296. [link]

Kretschmer M, Leroch M, Mosbach A, Walker AS, Fillinger S, Mernke D, Schoonbeek HJ, Pradier JM, Leroux P, De Waard MA, and Hahn M. (2009). Fungicide-Driven Evolution and Molecular Basis of Multidrug Resistance in Field Populations of the Grey Mould Fungus Botrytis cinerea. PLoS Pathog, 2009. 5(12): p. e1000696. [DOI]

Takahara, H., Dolf, A., Endl, E. & O’Connell, R. (2009) Flow cytometric purification of Colletotrichum higginsianum biotrophic hyphae from Arabidopsis leaves for stage‐specific transcriptome analysis. Plant Journal59: 672‐683. [DOI]

Meyer, D., Pajonk, S., Micali, C., O’Connell, R., & Schulze‐Lefert, P. (2009) Extracellular transport and integration of plant secretory proteins into pathogen‐induced cell wall compartments. Plant Journal57: 986‐999. [DOI]

Adam-Blondon AF, Bacilieri R, Baillieul F, Boursiquot JM, Clément C, Daire X, Delmotte F, Delrot S, Dubreuil C, Duchêne E, Gauthier A, Karst F, Lacombe T, Laucou V, Merdinoglu D, Mestre P, Ollat N, Pelsy F, Péros JP, Poinssot B, Pugin A, Rey P, Terrier N, This P, Trouvelot S, Viaud M. (2009). Perspectives pour la viticulture du décryptage du génome de la vigne. Partie 2/3: Economiser les intrants. Revue des Oenologues, 130, 9-11. [link]

Adam-Blondon AF, Bacilieri R, Baillieul F, Boursiquot JM, Clément C, Daire X, Delmotte F, Delrot S, Dubreuil C, Duchêne E, Gauthier A, Karst F, Lacombe T, Laucou V, Merdinoglu D, Mestre P, Ollat N, Pelsy F, Péros JP, Poinssot B, Pugin A, Rey P, Terrier N, This P, Trouvelot S, Viaud M. (2009). Perspectives pour la viticulture du décryptage du génome de la vigne. Partie 3/3: Maîtrise de la maturation et gestion des ressources génétiques de la vigne. Revue des Oenologues, 131. [link]

Huser, A., Takahara, H., Schmalenbach, W. & O’Connell, R. (2009) Discovery of pathogenicity genes in the crucifer anthracnose fungus, Colletotrichum higginsianum, using random insertional mutagenesis. Molecular Plant‐Microbe Interactions22: 143‐156. [DOI]

Walker AS., Bouguennec A., Confais J., Morgant G., Leroux P. (2009). Oïdium, le cas triticale est riche d’enseignements. Caractérisation des populations d’oïdium infestant le triticale : révélation d’une nouvelle entité à l’origine de cette maladie émergente, et ses conséquences pour la sélection variétale. PHYTOMA La Défense des Végétaux (FR), vol 629, 21-25.

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Choquer M, Robin G, Le Pêcheur P, Giraud C, Levis C, Viaud M. (2008) Ku70 or Ku80 deficiencies in the fungus Botrytis cinerea facilitate targeting of genes that are hard to knockout in a wild-type context. FEMS Microbiol Lett 289:225-232. [DOI]

Pinedo C, Wang CM, Pradier JM, Dalmais B, Choquer M, Le Pêcheur P, Morgant G, Collado IG, Cane DE, Viaud M. (2008) Sesquiterpene synthase from the botrydial biosynthetic gene cluster of the phytopathogen Botrytis cinerea. ACS Chem Biol 3:791-801. [DOI]

Schumacher J., Viaud M., Simon A., and Tudzynski B. (2008). The Galpha subunit BCG1, the phospholipase C (BcPLC1) and the calcineurin phosphatase co-ordinately regulate gene expression in the grey mould fungus Botrytis cinerea. Mol Microbiol. 2008 Feb; 67(5): 1027-1050. [DOI]

Gioti A, Pradier JM, Fournier E, Le Pêcheur P, Giraud C, Debieu D, Bach J, Leroux P, Levis C. (2008). A Botrytis cinerea emopamil binding domain protein, required for full virulence, belongs to a eukaryotic superfamily which has expanded in euascomycetes. Eukaryot Cell. 2008 Feb;7(2):368-78. [DOI]

Fournier E, Giraud T. (2008). Sympatric genetic differentiation of a generalist pathogenic fungus, Botrytis cinerea, on two different host plants, grapevine and bramble. J Evol Biol. 2008 Jan;21(1):122-32. [DOI]

Giraud T, Enjalbert J, Fournier E, Delmotte F, and Dutech C. (2008). Review : Population genetics of fungal diseases of plants. Parasite 15(3):449-54. [Accès à l'article]

Karchani-Balma S, Gautier, A, Raies, A and Fournier E. 2008. Geography, plants, and growing systems shape the genetic structure of Tunisian Botrytis cinerea populations. Phytopathology, 98(12):1271-9. [DOI]

Aguileta G, Marthey S, Chiapello H, Lebrun MH, Rodolphe F, Fournier E, Gendrault-Jacquemard A, Giraud T. (2008). Assessing the performance of single-copy genes for recovering robust phylogenies. Syst. Biol. 57(4) : 613-627. [DOI]

Kleemann, J., Takahara, H., Stüber, K. & O’Connell, R. (2008) Identification of soluble secreted proteins from appressoria of Colletotrichum higginsianum by analysis of expressed sequence tags. Microbiology 154: 1204‐1217. [DOI]

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Choquer M, Fournier E, Kunz C, Levis C, Pradier JM, Simon A, Viaud M. (2007). Botrytis cinerea virulence factors: new insights into a necrotrophic and polyphageous pathogen. FEMS Microbiol Lett. 2007 Dec;277(1):1-10. Review. [DOI]

Dutech C, Enjalbert J, Fournier E, Delmotte F, Barrès B, Carlier J, Tharreau D, Giraud T. (2007). Challenges of microsatellite isolation in fungi. Fungal Genet Biol 44(10):933-49. [DOI]

LeGac M, Hood ME, Fournier E, Giraud T. (2007). Phylogenetic evidence of host-specific cryptic species in the anther smut fungus. Evolution 61(1):15-26. [DOI]

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O'Connell R.J. & Panstruga R. (2006) Tête à tête inside a plant cell: Establishing compatibility between plants and biotrophic fungi and oomycetes. New Phytologist171:699-718. [link]

Gioti A, Simon A, Le Pêcheur P, Giraud C, Pradier JM, Viaud M, Levis C. (2006). Expression profiling of Botrytis cinerea genes identifies three patterns of up-regulation in planta and an FKBP12 protein affecting pathogenicity. J Mol Biol. 2006 Apr 28;358(2):372-86. Erratum in: J Mol Biol. 2006 Dec 1;364(3):550. [DOI]

Viaud M, Fillinger S, Liu W, Polepalli JS, Le Pêcheur P, Kunduru AR, Leroux P, Legendre L. (2006). A class III histidine kinase acts as a novel virulence factor in Botrytis cinerea. Mol Plant Microbe Interact. 2006 Sep;19(9):1042-50. [DOI]

Shimada C., Lipka V., O’Connell R., Okuno T., Schulze-Lefert P. & Takano Y. (2006) Nonhost resistance in Arabidopsis-Colletotrichum interactions acts at the cell periphery and requires actin filament function. Molecular Plant-Microbe Interactions19: 270-279. [link]

Fillinger S., Amselem J., Artiguenave F., Billault A., Choquer M., Couloux A., Cuomo C., Dickman M., Fournier E., Gioti A., Giraud C., Kodira C., Kohn L., Legeai F., Levis C., Mauceli E., Pommier C., Pradier JM., Quevillon E., Rollins J., Segurens B., Simon A., Viaud M., Weissenbach J., Wincker P. and Lebrun MH. (2006). The genome projects of the plant pathogenic fungi Botrytis cinerea and Sclerotinia sclerotiorum. In Macromolecules and secondary metabolites of grapevine and wine. edited by Philippe Jeandet, Christophe Clément, Alexandra Conreux. - [Paris] : Éd. Tec & doc - ISBN 978-2-7430-0965-6 (Tec & doc). International symposium on macromolecules and secondary metabolites of grapevine and wine (01 ; 2006 ; Reims, Marne) [link]

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Viaud M., Legeai F., Pradier J.M., Brygoo Y., Bitton F., Halary S., Weissenbach J., Brunet-Simon A., Duclert A., Fillinger S., Fortini D., Gioti A., Giraud C., Lebrun I., Le Pêcheur P., Samson D., Levis C. (2005). Expressed Sequence Tags from the phytopathogenic fungus Botrytis cinerea. Eur. J. Plant Pathol. 2005 Feb; 111: 139-146. [DOI]

Siewers V, Viaud M, Jimenez-Teja D, Collado IG, Gronover CS, Pradier JM, Tudzynski B, Tudzynski P. (2005). Functional analysis of the cytochrome P450 monooxygenase gene bcbot1 of Botrytis cinerea indicates that botrydial is a strain-specific virulence factor. Mol Plant Microbe Interact. 2005 Jun;18(6):602-12. [DOI]

Fournier E, Giraud T, Albertini C, Brygoo Y. (2005). Partition of the Botrytis cinerea complex in France using multiple gene genealogies. Mycologia. 2005 Nov-Dec;97(6):1251-67. [DOI]

Genton BJ, Jonot O, Thévenet D, Fournier E, Blatrix R, Vautrin D, Solignac M, Giraud T. (2005). Isolation of five polymorphic microsatellite loci, using an enrichment protocol, in the invasive weed Ambrosia artemisiifolia (Asteraceae). Mol. Ecol. Notes 5(2), 381-383. [DOI]

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Gourgues M, Brunet-Simon A, Lebrun MH, Levis C. (2004). The tetraspanin BcPls1 is required for appressorium-mediated penetration of Botrytis cinerea into host plant leaves. Mol Microbiol. 2004 Feb;51(3):619-29. [DOI]

O'Connell, R., Herbert, C., Sreenivasaprasad, S., Khatib, M., Esquerré-Tugayé, M.-T. & Dumas, B. (2004) A novel Arabidopsis-Colletotrichum pathosystem for the molecular dissection of plant-fungal interactions. Molecular Plant-Microbe Interactions17: 272-282. [link]

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Martinez F., Blancard D., Lecomte P., Levis C., Dubos B. and Fermaud M. (2003). Phenotypic differences between vacuma and transposa subpopulations of Botrytis cinerea. Eur. J. Plant Pathol. 109(5):479-488. [DOI]

Fournier E., Levis C., Fortini D., Leroux P., Giraud T., and Brygoo Y. (2003). Characterization of Bc-hch, the Botrytis cinerea homolog of the Neurospora crassa het-c vegetative incompatibility locus, and its use as a population marker. Mycologia 2003 95(2): 251-261. [link]

Poinssot B., Vandelle E. Bentéjac M., Adrian M., Levis C., Brygoo Y., Garin J., Sicilia F., Coutos-Thevenot P. and Pugin,A. (2003). The endopolygalacturonase 1 from Botrytis cinerea activates grapevine defence reactions unrelated to its enzymatic activity. Mol Plant Microbe Interact. 2003 Jun;16(6):553-64. [DOI]

Valette-Collet O., Cimerman A., Reignault P., Levis C. and Boccara M. (2003). Disruption of Botrytis cinerea pectin methylesterase gene bcpme1 reduces virulence on several host plants. Mol Plant Microbe Interact. 2003 Apr;16(4):360-7. [DOI]

Viaud M, Brunet-Simon A, Brygoo Y, Pradier JM, Levis C. (2003). Cyclophilin A and calcineurin functions investigated by gene inactivation, cyclosporin A inhibition and cDNA arrays approaches in the phytopathogenic fungus Botrytis cinerea. Mol Microbiol. 2003 Dec;50(5):1451-65. [DOI]

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Gourgues M, Clergeot PH, Veneault C, Cots J, Sibuet S, Brunet-Simon A, Levis C, Langin T, Lebrun MH. (2002). A new class of tetraspanins in fungi. Biochem Biophys Res Commun. 2002 Oct 11;297(5):1197-204. [DOI]

Bakan B, Giraud-Delville C, Pinson L, Richard-Molard D, Fournier E, Brygoo Y. (2002). Identification by PCR of Fusarium culmorum strains producing large and small amounts of deoxynivalenol. Appl Environ Microbiol. 2002 Nov;68(11):5472-9. [DOI]

Albertini C, Thébaud G, Fournier E, Leroux P (2002). Eburicol 14alpha-demethylase gene (cyp51) polymorphism and speciation in Botrytis cinerea. Mycol. Res. 106: 1171-1178. [DOI]

Fournier E, Giraud T, Loiseau A, Vautrin D, Estoup A, Solignac M, Cornuet JM, Brygoo Y (2002). Characterization of nine polymorphic microsatellite loci in the fungus Botrytis cinerea (Ascomycota). Molecular Ecology Notes 2: 253-255. [DOI]

Fournier E and Loreau M (2002). Foraging activity of the carabid beetle Pterostichus melanarius Ill. in field margins habitats. Agriculture, Ecosytems and Environment 89: 253-259. [DOI]

Giraud T, Fournier E, Vautrin D, Solignac M, Shykoff JA (2002). Isolation of 44 polymorphic microsatellite loci in three host races of the phytopathogenic fungus Microbotryum violaceum. Molecular Ecology Notes 2: 142-146. [DOI]

Giraud T, Fournier E, Vautrin D, Solignac M, Vercken E, Bakan B, Brygoo Y (2002). Isolation of eight polymorphic microsatellite loci, using an enrichment protocol, in the phytopathogenic fungus Fusarium culmorum. Molecular Ecology Notes 2: 121-123. [DOI]

Roose-Amsaleg C, de Vallavieille-Pope C, Brygoo Y, Levis C (2002) Characterisation of a length polymorphism in the two intergenic spacers of ribosomal RNA in Puccinia striiformis f. sp. tritici, the causal agent of wheat yellow rust. Mycol. Res. 106: 918-924. [DOI]

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Viaud M, Pasquier A & Brygoo Y (2000). Diversity of soil fungi studied by PCR-RFLP of ITS. Mycol. Res. 104 (9): 1027-1032. [DOI]

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Giraud T., Fortini D., Levis C., Lamarque C., Leroux P., LoBuglio K. and Brygoo Y. (1999). Two sibling species of the Botrytis cinerea complex, transposa and vacuma, are found in sympatry on numerous host plants. Phytopathol. 89(10): 967-973. [DOI]

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Giraud T., Fortini D., Levis C. and Brygoo Y. (1998). The minisatellite MSB1, in the fungus Botrytis cinerea, probably mutates by slippage. Mol. Biol. Evol. 15(11): 1524-1531. [link]

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Levis C.,Giraud T., Dutertre M., Fortini D., Brygoo Y. (1997) Telomeric DNA of Botrytis cinerea: a useful tool for strain identification. FEMS Microbiol. Lett. 157: 267-272. [DOI]

Levis C., Fortini D. and Brygoo Y. (1997b). Flipper, a mobile Fot1-like transposable element in Botrytis cinerea. Mol. Gen. Genet. 254: 674-680. [DOI]

Levis C., Fortini D. and Brygoo Y. (1997a). Transformation of Botrytis cinerea with the structural nitrate reductase gene (niaD) shows a high frequency of homologous recombination. Curr. Genet. 32: 157-162. [DOI]

Giraud T., Fortini D., Levis C., Leroux P. and Brygoo,Y. (1997). RFLP markers show genetic recombinaison in Botrytis fuckeliana (Botrytis cinerea) and transposable elements reveal two sympatric species. Mol. Biol. Evol. 14(11): 1177-1185. [link]

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Diolez A., Marches F., Fortini D.and Brygoo Y. (1995). Boty, a long terminal repeat (LTR) retroelement in the phytopathogenic fungus Botrytis cinerea. Appl. Env. Microbiol. 103-108. [link]